Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0929
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   4.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -2

Query: 156 MSFNIDPHVTNSFFAASVFSLIIEMRNTTVTKV 58
           +S+N+  H+    F    F  I+++RN ++ ++
Sbjct: 342 LSYNMLTHIDARMFKDLFFLQILDLRNNSIDRI 374


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 502 VKLDMLILDRILQAPGEHLVVPSMVKARLSE*VHNMVLTLTGKQVKVSLFI 654
           ++LD +    IL  PG+HL V +  ++ L E +   V T     V + L I
Sbjct: 739 LELDDIASMEILYKPGDHLGVFACNRSELVEAILKRVQTPFDPDVPIELQI 789


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
 Frame = -2

Query: 288 SCHRANQPVTIV--SSETSTAVTDCCPDPDPYFTSCE*SLNFKSVLMSFN-IDPHVTNSF 118
           S ++AN    +V  S+  +     CCP+P P  T  E  L  + +   FN I P +  + 
Sbjct: 171 SNYQANGEFDLVNFSARRNVEYYSCCPEPYPDIT-YEIRLRRRPMFYVFNLILPCILINS 229

Query: 117 FAASVFSLIIEM-RNTTVTKVAIERIFVFSIFLEQNNP 7
            A  VF +  E     T+   A+  + VF + + ++ P
Sbjct: 230 VALLVFYVPSESGEKVTLGISALLSMTVFLMTIRESLP 267


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 267 PVTIVSSETSTAVTDCCPDPDPYFTSCE*SLNFKSVLMSFNIDPH 133
           P T   +ET T V +   D  P     E   NFK +      +PH
Sbjct: 231 PYTETETETWTRVFNTLVDLVPKHACAEYRRNFKKMQEEKIFEPH 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,209
Number of Sequences: 438
Number of extensions: 4834
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)