Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0929
         (829 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25110.1 68415.m03004 MIR domain-containing protein similar t...    74   1e-13
At5g67090.1 68418.m08459 subtilase family protein contains simil...    33   0.23 
At1g42367.1 68414.m04881 hypothetical protein                          32   0.40 
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi...    29   2.8  
At5g56360.1 68418.m07034 calmodulin-binding protein similar to a...    29   3.8  
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    29   5.0  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    29   5.0  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    28   6.6  
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    28   6.6  

>At2g25110.1 68415.m03004 MIR domain-containing protein similar to
           SP|Q99470 Stromal cell-derived factor 2 precursor
           (SDF-2) {Homo sapiens}; contains Pfam profile PF02815:
           MIR domain
          Length = 218

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
 Frame = +1

Query: 256 NSHWLVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXX 435
           NS+W+V+P+ G T K+G  +K    IRLQH+ T+K LHSH   SP+SGN EVSC+     
Sbjct: 80  NSYWIVKPVPGTTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCF-GDDT 138

Query: 436 XXXXXXNWTVVC--NNDYWRRDTPVKL 510
                 +W ++   +   W++D  V+L
Sbjct: 139 NSDTGDHWKLIIEGSGKTWKQDQRVRL 165



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/35 (68%), Positives = 28/35 (80%)
 Frame = +2

Query: 128 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVT 232
           +T GS +KL++   K RLHSHDV YGSGSGQQSVT
Sbjct: 37  ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVT 71


>At5g67090.1 68418.m08459 subtilase family protein contains
           similarity to subtilisin-like protease ag12 GI:757522
           from [Alnus glutinosa]
          Length = 736

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 291 FSCHRANQPVTIVSSETSTAVTDCCPDPDPYFTSCE*SLNFKSVLMSFNID 139
           F CH A Q   +++  T + ++D C  P PY       LN+ S++  F  D
Sbjct: 598 FLCHEAKQSRKLINIITRSNISDACKKPSPY-------LNYPSIIAYFTSD 641


>At1g42367.1 68414.m04881 hypothetical protein
          Length = 150

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 28/107 (26%), Positives = 44/107 (41%)
 Frame = +1

Query: 331 IRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXXNWTVVCNNDYWRRDTPVKL 510
           I   H  T+ +   H FTSPL  + EV C+           + T+   +  +       L
Sbjct: 2   IMTNHSTTRSSRRHHHFTSPL--DPEVECHHLHHQTLTRSLHSTM--RSSVFTSIIRQPL 57

Query: 511 DMLILDRILQAPGEHLVVPSMVKARLSE*VHNMVLTLTGKQVKVSLF 651
           D+L L R   +P  H    SM   R    +H+   + T K+ ++ LF
Sbjct: 58  DLLTLPRGRVSPPHHSTAYSMTSFRAFFILHSTRHSSTRKKRRLQLF 104


>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 632

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 50  SIATLVTVVFLISIISEKTEAAKNEFVTCGSILKLINTDLKLRLHSHDVKYGSG 211
           SI  L    FL+ +    +E   NEF T  S+LK  +T     +H+H +K+G G
Sbjct: 106 SINGLKDQAFLLYVQLLSSEINPNEF-TFSSLLKSCSTKSGKLIHTHVLKFGLG 158


>At5g56360.1 68418.m07034 calmodulin-binding protein similar to
           alpha glucosidase II beta subunit from GI:2104691 [Mus
           musculus]
          Length = 647

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 291 FSCHRA-NQPVTIVSSETSTAVTDCCPDPDPY--FTSCE 184
           F C  A + PV + SS  +  + DCC   D Y    SC+
Sbjct: 92  FYCRNAGHSPVILFSSRVNDGICDCCDGSDEYDGHVSCQ 130


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 510 RHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTD 623
           RH  TGSY +G      + +  QG   G    YG Y D
Sbjct: 106 RHGYTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMD 143


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 510 RHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTD 623
           RH  TGSY +G      + +  QG   G    YG Y D
Sbjct: 108 RHGYTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMD 145


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 225 DCCPDPDPYFTSCE*SLNFKSVLMSFNIDPHVTNSFFAASVFSLIIEMRNTTVTKVAIE 49
           + C + DP + S +  +NF    +S   DP      F  ++F L  E R   +T V ++
Sbjct: 458 ETCLEGDPSYRSMDSFINFSDAWVSQKFDPKACTWAFGMNLFDL-EEWRRQELTSVYLK 515


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
           factor-related similar to CCAAT-box-binding
           transcription factor (CCAAT-binding factor) (CBF)
           (Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
           musculus]
          Length = 1056

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 702 IITLYVQHADVVIVLQDEQRDLNL---LASQCKHHIVNSLRQSRLDH*WDDQMFARSLQD 532
           +  L   H ++  V+ DE         L  + K+H VN L Q RL H  +D   A+ L D
Sbjct: 381 LTNLLADHPNMKAVVIDEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGEDPKVAKRLID 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,876,683
Number of Sequences: 28952
Number of extensions: 373622
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)