Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0928
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16857.2 68416.m02153 two-component responsive regulator fami...    28   7.0  
At3g16857.1 68416.m02152 two-component responsive regulator fami...    28   7.0  
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil...    28   9.2  
At3g58520.1 68416.m06523 expressed protein                             28   9.2  
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    28   9.2  
At1g59540.1 68414.m06694 kinesin motor protein-related similar t...    28   9.2  

>At3g16857.2 68416.m02153 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver
           domain; similar to ARR1 protein GB:BAA74528 from
           [Arabidopsis thaliana] (Plant Cell Physiol. (1998) 39
           (11), 1232-1239)
          Length = 690

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 274 TNLSSPHVIVLLINKKFSPVLPSHCF*AKCRTSLTGPITTATSYIE 137
           TNL++ H    +    F P LP + F       ++ P+  ATSY E
Sbjct: 497 TNLTTQHSSSSMPYNNFQPELPVNSFPLASAPGISVPVRKATSYQE 542


>At3g16857.1 68416.m02152 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver
           domain; similar to ARR1 protein GB:BAA74528 from
           [Arabidopsis thaliana] (Plant Cell Physiol. (1998) 39
           (11), 1232-1239)
          Length = 669

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 274 TNLSSPHVIVLLINKKFSPVLPSHCF*AKCRTSLTGPITTATSYIE 137
           TNL++ H    +    F P LP + F       ++ P+  ATSY E
Sbjct: 497 TNLTTQHSSSSMPYNNFQPELPVNSFPLASAPGISVPVRKATSYQE 542


>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646; supporting cDNA
           gi|13160645|dbj|AB036832.1|;
          Length = 876

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 409 QYSKTLNHIFKERNTTAKTPQRIINSPAECAQISGIKLNKQ 531
           Q SKTL+HI K  +T  K PQ  +   A+  Q   +K  K+
Sbjct: 421 QESKTLDHIGKVTDTEHKVPQERVEIDAD--QAKSVKSTKK 459


>At3g58520.1 68416.m06523 expressed protein
          Length = 418

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 674 PHNYEDSLLLRSPDHWXFL 730
           P NYE +L+++ PDH+ F+
Sbjct: 167 PDNYEKTLVMKYPDHFCFV 185


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 326 VLYEYDDKKRKI*LNIHLNQINKSF*CDNTPRHLTTYLKKGI 451
           V+   D ++R++ L  H  +I  +F   NTP   T ++KK I
Sbjct: 549 VIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNI 590


>At1g59540.1 68414.m06694 kinesin motor protein-related similar to
           kinesin motor protein (kin2) GI:2062751 from (Ustilago
           maydis)
          Length = 823

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 365 LNIHLNQINKSF*CDNTPRHLTTYLKKGILQRKLHRE*LIPQLNVLK*VELNSINSFFRQ 544
           + I+  +IN     +N    +  +L++G+    L  E +     +LK ++   +N  F +
Sbjct: 129 MEIYNEEINDLLAVENQRLQIHEHLERGVFVAGLKEEIVSDAEQILKLIDSGEVNRHFGE 188

Query: 545 *NMN 556
            NMN
Sbjct: 189 TNMN 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,454,623
Number of Sequences: 28952
Number of extensions: 337613
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)