Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0927
         (878 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)                 62   4e-10
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)                 29   6.6  

>SB_6177| Best HMM Match : PDE6_gamma (HMM E-Value=1.6)
          Length = 642

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = +1

Query: 523 RDYRCXTWHLEPTVRLLSWAGKSIEPYGXDYILQKLGFSYARDHHYPSCLQXGTWXPL 696
           R +R   W LEP VR LSWAGK+++P   D++LQKLGF++AR    P   Q G   P+
Sbjct: 560 RQFRSKAWKLEPKVRFLSWAGKNMDPVNMDWVLQKLGFTHAR-LTIPKWAQRGAMDPM 616



 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 27/38 (71%)
 Frame = +2

Query: 320 VVECSFITEFEDHIFVSVDAEAFLFLHDLISSYLKEKE 433
           VVECSF + F+D + V++D     FLHD++ +Y+KE E
Sbjct: 478 VVECSFSSCFDDSLCVTMDVGLLFFLHDVVQTYIKENE 515


>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1829

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -2

Query: 784 NEKRXLKSC--CGQ*LPNEPASRNGATVTFVE 695
           NEK+  K+C  CG+    + A R+GAT+T VE
Sbjct: 758 NEKKCRKNCYKCGKKGHAKSACRSGATITHVE 789


>SB_58629| Best HMM Match : Homeobox (HMM E-Value=0.05)
          Length = 466

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 456 LPGIWATRSFSLR*EEMRSWRNRNASASTDTKMWSSNSVMKLHSTTGFSS 307
           L GI +  +F      + SW+  N     DTKMWS  +  +    TG  S
Sbjct: 247 LGGISSLNNFEFTPTGITSWKTYNVGQG-DTKMWSELNATERRKCTGLLS 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,591,465
Number of Sequences: 59808
Number of extensions: 336087
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)