Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0927
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.53 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 760 CCGQ*LPNEPASRNGATVTFVEGGSRCPAASNLGNGG 650
           CC   L    +S  G  VT   GGS    A+N G GG
Sbjct: 15  CCDN-LGGPGSSSAGGVVTGASGGSIVVGANNGGGGG 50


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 275 HHQPAAPPTHNDEKPVVECSF 337
           HH  AA P H    P+   S+
Sbjct: 433 HHSHAATPHHQHSTPLAHSSY 453


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 600  VRLGLHPAEARVQLRXGPPLPKLLAAGHLXPPSTKVTVAPFLL 728
            +RL LH  +    LR   P P +L A H       V    FLL
Sbjct: 1095 LRLCLHHRDLPCVLRASTPAPVVLEAVHASRRVLIVLTRNFLL 1137


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 736 EPASRNGATVTFVEGG 689
           +P   NG TVT VE G
Sbjct: 130 DPGEHNGDTVTDVEAG 145


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 736 EPASRNGATVTFVEGG 689
           +P   NG TVT VE G
Sbjct: 125 DPGEHNGDTVTDVEAG 140


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 715 ATVTFVEGGSRCPAASNLGNGGPXRS*TRASAGCSPSRTAL*TYRPT 575
           ATVT     +  PAAS  G G    S   A++  + + T   T  PT
Sbjct: 217 ATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPT 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,863
Number of Sequences: 438
Number of extensions: 3078
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)