Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0927
         (878 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    28   7.2  
At5g35604.1 68418.m04242 hypothetical protein                          28   9.5  
At4g22620.1 68417.m03262 auxin-responsive family protein auxin-i...    28   9.5  
At1g19130.1 68414.m02379 expressed protein                             28   9.5  

>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 290 APPTHNDEKPVVECSFITEFEDHI 361
           AP  HN     +EC + ++FE H+
Sbjct: 355 APRPHNSGHQTIECCYTSQFEQHL 378


>At5g35604.1 68418.m04242 hypothetical protein
          Length = 298

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 691 GSRCPAASNLGNGGPXRS*TRASAGCSP 608
           G R P   + GN  P R   RA   CSP
Sbjct: 67  GGRSPRRPSRGNSSPRRDKARARTDCSP 94


>At4g22620.1 68417.m03262 auxin-responsive family protein
           auxin-induced protein 10A, Glycine max., PIR2:JQ1099
          Length = 160

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 343 GVRRPHLRVGGRRSIPVPPRPHLLLPQREGASGPDARQQVV 465
           G++    R+G     P  PR HL++    G SG D R+ VV
Sbjct: 62  GMKPGQTRLGNEPKTPTVPRGHLVV--HVGESGEDTRRVVV 100


>At1g19130.1 68414.m02379 expressed protein
          Length = 187

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 481 LHQLAPPGSVTQDYRDYRCXTWHL---EPTVRLLSWAGKSIEPYGXDYILQKL 630
           ++ L P GSV++ +R     TWH    EP   + S + +S++  G    LQ++
Sbjct: 56  IYFLLPSGSVSRLHRIPMAETWHFYLGEPLTVIRSLSTRSLQTSGLVRFLQRM 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,637,108
Number of Sequences: 28952
Number of extensions: 239167
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)