Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0926
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              158   5e-39
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   4e-37
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   7e-37
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             147   7e-36
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         78   6e-15
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         72   5e-13
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         66   4e-11
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         63   3e-10
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   6e-10
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          56   2e-08
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.011
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)                     32   0.54 
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.8  
SB_24760| Best HMM Match : PT (HMM E-Value=0.17)                       29   5.0  
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)                       29   5.0  
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  158 bits (383), Expect = 5e-39
 Identities = 70/95 (73%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
 Frame = +2

Query: 2   HE-GFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMA 178
           HE GFGYKGS FHR+IP FM QGGDFT HNGTGGKSIYG KFEDENF LKHTG GVLSMA
Sbjct: 175 HEKGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMA 234

Query: 179 NAGADTNGSQFFITTVKTSWLDGRNVSLGMLLKAW 283
           N+G +TNGSQFF+TT KT WLDG++V  G +++ +
Sbjct: 235 NSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGF 269



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 21/38 (55%), Positives = 31/38 (81%)
 Frame = +1

Query: 256 VFGNVVEGMEVVKQIETFGXQSGKTSKRIXIKDCGQIA 369
           VFGNV+EG +VV+++E  G QSGK SK++ I DCG+++
Sbjct: 261 VFGNVIEGFDVVRKMEAVGSQSGKASKKVVIDDCGELS 298


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  151 bits (367), Expect = 4e-37
 Identities = 67/87 (77%), Positives = 73/87 (83%)
 Frame = +2

Query: 5   EGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANA 184
           +GFGYKGS FHRVIP FM QGGDFT  +GTGGKSIYG KF DENF LKHTGPG+LSMANA
Sbjct: 43  KGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANA 102

Query: 185 GADTNGSQFFITTVKTSWLDGRNVSLG 265
           G  TNGSQFF+ T KTSWLDG++V  G
Sbjct: 103 GPGTNGSQFFLCTAKTSWLDGKHVVFG 129



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 20/37 (54%), Positives = 27/37 (72%)
 Frame = +1

Query: 256 VFGNVVEGMEVVKQIETFGXQSGKTSKRIXIKDCGQI 366
           VFG+V +GM+VVK+IE  G  SGKTSK++ I D   +
Sbjct: 127 VFGSVKDGMDVVKKIEKVGSDSGKTSKKVVIADSASV 163


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  151 bits (365), Expect = 7e-37
 Identities = 69/91 (75%), Positives = 76/91 (83%)
 Frame = +2

Query: 5   EGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANA 184
           +GFGYK SIFHRVI +FM+QGGDFT  +GTGGKSIYG KF DENF L+H G G LSMANA
Sbjct: 85  KGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANA 144

Query: 185 GADTNGSQFFITTVKTSWLDGRNVSLGMLLK 277
           G DTNGSQFFITTVKT WLDGR+V  G +LK
Sbjct: 145 GKDTNGSQFFITTVKTPWLDGRHVVFGKVLK 175


>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  147 bits (357), Expect = 7e-36
 Identities = 65/91 (71%), Positives = 75/91 (82%)
 Frame = +2

Query: 5   EGFGYKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANA 184
           +GFGYK SIFHRVI NFM+QGGDFTN +GTGG SIYG  F+DENF LKH GPG L MANA
Sbjct: 66  QGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANA 125

Query: 185 GADTNGSQFFITTVKTSWLDGRNVSLGMLLK 277
           G +TNGSQF+ITT+KTSWLDG +   G +L+
Sbjct: 126 GKNTNGSQFYITTIKTSWLDGSHTCFGKVLE 156


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 36/65 (55%), Positives = 48/65 (73%), Gaps = 1/65 (1%)
 Frame = +2

Query: 86  NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRNVSL 262
           +GTGG+SI+G +FEDE +  L+H  P  +SMANAG +TNGSQFFIT V T WLD ++   
Sbjct: 2   DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61

Query: 263 GMLLK 277
           G ++K
Sbjct: 62  GRVVK 66


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +2

Query: 89  GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRNVSLGM 268
           G GG+S+YG  FEDE+F++ H   GV+ MAN G  TNGSQF+IT     W+D + V+ G 
Sbjct: 46  GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105

Query: 269 LLK 277
           +++
Sbjct: 106 VIE 108


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = +2

Query: 86  NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTV 226
           NGTGG+SIYG  F DE F  KH  P +LSMAN G +TNGSQFFI  V
Sbjct: 25  NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFIIHV 71



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 256 VFGNVVEGMEVVKQIETF-GXQSGKTSKRIXIKDCGQI 366
           VFG+V++G E+V+QIE+    +  + +  + + +CG++
Sbjct: 72  VFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 109


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +2

Query: 146 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRNVSLGMLLK 277
           +H  PG+LSMAN+G +TNGSQFFITTV T  LDGR+V  G +LK
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLK 231



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 256 VFGNVVEGMEVVKQIETFGXQSGKTSKRIXIKDCGQIA 369
           VFG V++GM+VV+++E              I++CG++A
Sbjct: 225 VFGKVLKGMDVVRELEATPVDDSSPKSPCIIEECGELA 262


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 27/35 (77%), Positives = 31/35 (88%)
 Frame = +2

Query: 173 MANAGADTNGSQFFITTVKTSWLDGRNVSLGMLLK 277
           MANAG DTNGSQFFITTVKTSWLDG++V  G +L+
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLE 35



 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 256 VFGNVVEGMEVVKQIETFGXQSGKTSKRIXIKDCGQI 366
           VFG V+EGM+VV+++E    +     K   I D G +
Sbjct: 29  VFGKVLEGMDVVRKLENVNVKGSTPVKTCMIDDSGTL 65


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +2

Query: 164 VLSMANAGADTNGSQFFITTVKTSWLDGRNVSLG 265
           +LSMANAG  TNGSQFF+ T KTSWLDG++V  G
Sbjct: 2   ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFG 35


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +2

Query: 17  YKGSIFHRVIPNFMLQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGA-D 193
           Y G+ FHRVIP FM+QGG F   +    +       ++E     H   G L+MA     D
Sbjct: 60  YAGTQFHRVIPGFMVQGGGF---DADMQQKDTQAPIKNEADNGLHNVRGTLAMARTQVRD 116

Query: 194 TNGSQFFITTVKTSWLD 244
           +  SQFFI     ++LD
Sbjct: 117 SATSQFFINHKDNAFLD 133


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +2

Query: 149 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRNVSLGMLL 274
           H   G +SMAN G ++NGSQFFI   K   LD +    G  L
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
          Length = 175

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 256 VFGNVVEGMEVVKQIETF-GXQSGKTSKRIXIKDCGQI 366
           VFG+V++G E+V+QIE+    +  + +  + + +CG++
Sbjct: 5   VFGHVIQGEELVRQIESLPTNEKNRPNADVKVSNCGEL 42


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = -1

Query: 357 TVFDXDSLRGLPRLXAKGLNLLDNFHAFNNIPKDTFLPSSQEVLTVVMKNWEPLVSAPAL 178
           ++FD DS  G+ R        + N + FN I  D  +PS  ++ TV +   +   ++P L
Sbjct: 284 SIFDLDSSTGVIRTKQNLDFEVKNSYTFNVIASDGGVPSKNDLATVTINVLDTNDNSPQL 343

Query: 177 AMERTP 160
            +   P
Sbjct: 344 KITYLP 349


>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
          Length = 422

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 264 PKDTFLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 154
           P  T  PS+ E +T     WEP+  AP+     T GP
Sbjct: 32  PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68


>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
          Length = 259

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -1

Query: 297 LLDNFHAFNNIPKDTFLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 154
           +L++   +   P+ + LP S E     +LT++++N  P ++APA   +  P P
Sbjct: 71  VLNDDQWYQLFPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123


>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1110

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -1

Query: 297 LLDNFHAFNNIPKDTFLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 154
           +L++   +   P+   LP S E     +LT++++N  P ++APA   +  P P
Sbjct: 71  VLNDDQWYQLFPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,817,366
Number of Sequences: 59808
Number of extensions: 448499
Number of successful extensions: 1013
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)