Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0925
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    93   6e-20
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    93   6e-20

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 42/58 (72%), Positives = 43/58 (74%)
 Frame = +1

Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXKPXXXXXXXVN 429
           GHQTS ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRM  P K        VN
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 29/56 (51%), Positives = 36/56 (64%)
 Frame = +2

Query: 80  LSVARPLVSVYSEKSETVQGAAKPLPFVFXAPIRPXLVNDVHXSMXKNSRQXYCVS 247
           ++ ARP VS+Y+ K  +V      LPFVF APIRP LV  VH ++ KN RQ Y VS
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVS 55



 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +2

Query: 512 IXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKSQRL 649
           I +IPE+PLVV   VQ   KTK+ V   + + A+ D++KV  S++L
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKL 189


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 42/58 (72%), Positives = 43/58 (74%)
 Frame = +1

Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXKPXXXXXXXVN 429
           GHQTS ESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRM  P K        VN
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVN 116



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 30/56 (53%), Positives = 36/56 (64%)
 Frame = +2

Query: 80  LSVARPLVSVYSEKSETVQGAAKPLPFVFXAPIRPXLVNDVHXSMXKNSRQXYCVS 247
           ++ ARP VS+YS K  +V      LPFVF APIRP LV  VH ++ KN RQ Y VS
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVS 55



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = +2

Query: 512 IXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKSQRL 649
           I +IPE+PLVV   VQ   KTK+ V   + + A+ D++KV  S++L
Sbjct: 144 IEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKL 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,609
Number of Sequences: 5004
Number of extensions: 36111
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)