Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0925
(859 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 96 3e-20
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 95 5e-20
10_02_0199 + 6668902-6669293,6669825-6669882 37 0.024
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.22
11_01_0748 + 6299776-6300042 32 0.67
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.3
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955 28 8.3
10_07_0029 + 12031711-12032464,12044289-12044386 28 8.3
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 8.3
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 28 8.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 96.3 bits (229), Expect = 3e-20
Identities = 43/58 (74%), Positives = 45/58 (77%)
Frame = +1
Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXKPXXXXXXXVN 429
GHQTS ESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRM P K VN
Sbjct: 63 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVN 120
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 512 IXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKS 640
I +PELPLV++ + I KT Q + + + A++D K S
Sbjct: 148 IETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDS 190
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 95.5 bits (227), Expect = 5e-20
Identities = 41/48 (85%), Positives = 43/48 (89%)
Frame = +1
Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXK 399
GHQTS ESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRM P K
Sbjct: 62 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTK 109
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 512 IXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKS 640
I +PE PLVV+ ++ I KT Q + + + A++D K S
Sbjct: 147 IEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDS 189
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 36.7 bits (81), Expect = 0.024
Identities = 22/47 (46%), Positives = 23/47 (48%)
Frame = +1
Query: 241 REXGGGHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 381
RE GGG Q SW TGRA A + R R GG R A N G R
Sbjct: 30 REGGGGAQ----SWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.22
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 377 PPRHMLPKAP*PDLWVPPP 321
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>11_01_0748 + 6299776-6300042
Length = 88
Score = 31.9 bits (69), Expect = 0.67
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 223 LEAALL--REXGGGHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
LEA L+ R GGG + E+ G GRAVA + R H +G GA GG
Sbjct: 16 LEAVLVDRRMAGGGDDGAVETGGGGRAVAALARCWRRRWHGAGGGAGAVEAGGG 69
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
Length = 184
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 250 GGGHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFG 360
GGG WG+G + + GGG + SG G G
Sbjct: 38 GGGGSNGGSGWGSGSG-SGYGQASGGGAYASGGGGAG 73
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 382 YVHHDTCYRRHPDRTYG 332
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 250 GGGHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGN 363
GG H +G GR RGGG R G+G G+
Sbjct: 169 GGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +1
Query: 217 QELEAALLREXGGGHQTSXESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 381
+++ A + GGG S S G++V + + R+R H G G+ G++ + GG+
Sbjct: 64 EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122
Query: 382 MXXPXKP 402
M P P
Sbjct: 123 MLRPGFP 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,851,092
Number of Sequences: 37544
Number of extensions: 330905
Number of successful extensions: 1099
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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