Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0925
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               101   7e-22
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     30   2.1  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   3.7  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  28   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  101 bits (242), Expect = 7e-22
 Identities = 46/58 (79%), Positives = 46/58 (79%)
 Frame = +1

Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXKPXXXXXXXVN 429
           GHQTS ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRM  P K        VN
Sbjct: 56  GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVN 113



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGAAKPLPFVFXAPIRPXLVNDVHXSMXKNSRQXYCVS 247
           ARP+++V++E  E+       LP VF APIRP LVN VH ++ KN RQ Y V+
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVN 52



 Score = 39.1 bits (87), Expect = 0.005
 Identities = 17/46 (36%), Positives = 30/46 (65%)
 Frame = +2

Query: 512 IXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKSQRL 649
           I KI E+PLV++  ++ +TKT   V   +A+NA+ D+ K   S+++
Sbjct: 141 IEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKI 186


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -1

Query: 340 TYGYHHHGHAEFGQQHVRYPMI-RXWFGDHLLAHAVXLP-RVLXHRXVH 200
           +Y +HHHG  E   Q V    I R W    L +H    P RV+    +H
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 376 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRXWF 263
           HH  CY  H    Y Y+ H H  + + H  YP  R ++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 335 WVPPPRTRGIRATARPVPHD 276
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 376 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRY 284
           HH     RH  R + +HHH H E+ ++H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 385 TYVHHDTCYRRHPDRTYGYHHHGHA 311
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = -1

Query: 361 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRXWFGDHLLAHAVXLPRVLXHRXVHII 194
           Y +HP  T+ YHH  H +   ++ ++P +   +  H   H + +  +  H+ + +I
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRY--HQQTHKLLIVIINTHKLLIVI 465


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 265  TSXESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 381
            T  E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,121,198
Number of Sequences: 59808
Number of extensions: 333581
Number of successful extensions: 771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)