Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0925
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    93   3e-19
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    28   7.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 43/58 (74%), Positives = 43/58 (74%)
 Frame = +1

Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXKPXXXXXXXVN 429
           G Q S ESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG M  P K        VN
Sbjct: 58  GKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVN 115



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 25/53 (47%), Positives = 33/53 (62%)
 Frame = +2

Query: 89  ARPLVSVYSEKSETVQGAAKPLPFVFXAPIRPXLVNDVHXSMXKNSRQXYCVS 247
           ARPLV+VY EK E  Q   + LP VF  PIRP LV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/46 (43%), Positives = 31/46 (67%)
 Frame = +2

Query: 509 IIXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKSQR 646
           +I ++ E+PLVV+ KV+   KTK+ V+     + W+DI KVY S+R
Sbjct: 142 VIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSKR 187


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 74  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFXAPIRPXLVNDVHXSMXKNSRQXYCV-SX 250
           MS++V  P +S        V    + + F++  P    ++ D H    + +    CV S 
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241

Query: 251 EVVTKPVPNHGVPDVLLPE 307
           E +T  + +  V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,313
Number of Sequences: 27780
Number of extensions: 233300
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)