Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0925
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    93   2e-19
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    93   2e-19
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    31   0.98 
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins...    28   6.9  
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to...    28   9.1  
At1g76010.1 68414.m08825 expressed protein                             28   9.1  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/48 (83%), Positives = 42/48 (87%)
 Frame = +1

Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXK 399
           GHQTS ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRM  P K
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 112



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 83  SVARPLVSVYSEKSE--TVQGAAKPLPFVFXAPIRPXLVNDVHXSMXKNSRQXYCVS 247
           + ARPLV+V     +  T Q     LP V  AP+RP +VN VH  +  NSRQ Y VS
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 512 IXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKS 640
           I  +PE+PLVV+   + + KT   +   + + A+ D  K   S
Sbjct: 150 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNS 192


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 40/48 (83%), Positives = 42/48 (87%)
 Frame = +1

Query: 256 GHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMXXPXK 399
           GHQTS ESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRM  P K
Sbjct: 64  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTK 111



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 74  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFXAPIRPXLVNDVHXSMXKNSRQXYCVS 247
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RP +VN VH  +  NSRQ Y VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 512 IXKIPELPLVVAXKVQEITKTKQXVIXPEALNAWSDILKVYKS 640
           I  +PE+PLVV+   + + KT   +   + + A+ D  K   S
Sbjct: 149 IENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNS 191


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 376 HHDTCYRRHPDRTYGYHHHGHAEF 305
           HH   Y  H    YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
           Arabidopsis thaliana
          Length = 159

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 250 GGGHQTSXESWGT---GRAVARIPRVRGGGTHRSGQGAFG 360
           GGG  +S    G+   G  +  IP + GGGTHRSG  + G
Sbjct: 100 GGGGSSSRGGGGSSSRGGGLRPIP-IYGGGTHRSGHHSSG 138


>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
           glycine-rich protein; atGRP (GI:259447) [Arabidopsis
           thaliana]
          Length = 145

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 250 GGGHQTSXESW--GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 378
           GG +Q     +  G GR      R +GGG  + G G+ G+ CR G
Sbjct: 75  GGNYQGGGGRYQGGGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +1

Query: 250 GGGHQTSXESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 375
           G G     +  G GR   R  R RGGG  R G G F N   G
Sbjct: 304 GRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,560
Number of Sequences: 28952
Number of extensions: 225465
Number of successful extensions: 638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)