Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0924
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 85 1e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 56 7e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 52 1e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 49 7e-07
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 46 7e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 45 1e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 44 3e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 43 5e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 40 3e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 8e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 39 0.001
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 37 0.003
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 36 0.006
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 34 0.023
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 34 0.030
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.28
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 30 0.37
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 30 0.37
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 29 1.1
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 29 1.1
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 27 4.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 4.6
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 26 6.0
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 6.0
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 8.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 85.0 bits (201), Expect = 1e-17
Identities = 57/137 (41%), Positives = 74/137 (54%), Gaps = 3/137 (2%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA 531
R E+ V G+ V P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+A R +
Sbjct: 105 RKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVG 164
Query: 532 YQ-TGSGKTLAYILPAIVPH*TTNRLF--GEVMVRLLWSWAAYPESLAPQIQQVXCRFLG 702
TGSGKTL+Y LPAIV H L G+ + L+ A LA QIQQ C G
Sbjct: 165 ISATGSGKTLSYCLPAIV-HINAQPLLSPGDGPIVLV---LAPTRELAVQIQQ-ECTKFG 219
Query: 703 XTSLLFVNTVCVWWVAP 753
+S + CV+ P
Sbjct: 220 KSSR--IRNTCVYGGVP 234
Score = 45.2 bits (102), Expect = 1e-05
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 1/130 (0%)
Frame = +3
Query: 255 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYQK*SRGNCKWR*GS*SYSIL*RSKFS*L 434
DW + +L PF K+FY H V RS EV EY+K + + F
Sbjct: 73 DWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNY 132
Query: 435 CATRCKDNGLQRTDAHSSSRLADS*SGKNLVGV-PNGFRQNVGLHLASHCATLNNQPPIR 611
K G + + SG+++VG+ G + + L + +N QP +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA-IVHINAQPLLS 191
Query: 612 RGDGPIALVL 641
GDGPI LVL
Sbjct: 192 PGDGPIVLVL 201
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.0 bits (129), Expect = 7e-09
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*L- 528
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ L+R L
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVL-LQRKDLI 290
Query: 529 -AYQTGSGKTLAYILPAIV 582
+TGSGKT A+I+P I+
Sbjct: 291 GIAETGSGKTAAFIIPLII 309
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 51.6 bits (118), Expect = 1e-07
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +1
Query: 397 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP--IASLERI*LAYQTGSGKTLAYIL 570
PI F+E + +++G+K YKEPTPIQA WP +A + + +A +TGSGKT+A+ +
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIA-ETGSGKTVAFGI 221
Query: 571 PAI 579
PA+
Sbjct: 222 PAL 224
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 49.2 bits (112), Expect = 7e-07
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 367 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTG 543
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI + R +A QTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 544 SGKTLAYILPAI 579
SGKT ++ P +
Sbjct: 217 SGKTAGFLFPIL 228
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 46.0 bits (104), Expect = 7e-06
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +1
Query: 367 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP-IASLERI*LAYQTG 543
+ + G++ P+ + + + ++GY++PT IQAQ P I S + +TG
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
Query: 544 SGKTLAYILP 573
SGKT+A++LP
Sbjct: 466 SGKTIAFLLP 475
Score = 29.5 bits (63), Expect = 0.65
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Frame = +3
Query: 255 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYQK*SRGNCKWR*GS*SYSIL*RSKFS*L 434
D ++ + F K+FY + SP EV+E + S K R + S+
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRA-SLDGIKIRGIDCPKPVTSWSQCGLS 426
Query: 435 CATRCKDN--GLQRTDAHSSSRLADS*SGKNLVGVPNGFRQNVGLHLASHCATLNNQPPI 608
T N G ++ + + + SG++++GV L + +Q P+
Sbjct: 427 AQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPL 486
Query: 609 RRGDGPIALVL 641
+ G+GPIA+++
Sbjct: 487 KTGEGPIAIIM 497
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLER--I*LAYQTGSGKTLAYILPAI 579
F+E D + + + +G+K PTPIQ + P+ +R I LA QTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA-QTGSGKTAAFALPVI 105
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLER-I*LAYQTGSGKTLAYILP 573
F+ N +++ V G+K+ TP+QA P+ + + + TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLP 58
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 43.2 bits (97), Expect = 5e-05
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +1
Query: 400 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*L-AYQTGSGKTLAYILPA 576
I+ F + + +Q+ +K MG++ T IQ + P R L A +TGSGKTLA+++P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 577 I 579
I
Sbjct: 148 I 148
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 40.3 bits (90), Expect = 3e-04
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLER-I*LAYQTGSGKTLAYILPAI 579
F+ N + +G+ +G++ PT IQ + P+A L + I A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.1 bits (87), Expect = 8e-04
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +1
Query: 379 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LAYQ--TGSGK 552
G+ + + F + N +Q+ + +++PT +Q++ P+A LE L Q TGSGK
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLA-LEGKDLVAQARTGSGK 64
Query: 553 TLAYILPAI 579
T AY++P +
Sbjct: 65 TAAYLIPIL 73
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTGSGKTLAYILPAI 579
FE+ + G+ G++ P+PIQ + PIA R LA + G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 37.1 bits (82), Expect = 0.003
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +1
Query: 334 MKSKSTRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQ-QGVKTMGYKEPTPIQAQGWPI 504
+K K + +T +V +NP+ EE FP+ + + +K E T IQ P
Sbjct: 22 IKEKEAKKLQGITKGKAKVTGNNPVDPIEE--FPEGILCENLKKQNITECTTIQRYAIPT 79
Query: 505 ASLERI*LAYQ-TGSGKTLAYILPAI 579
+R LA TGSGKT+AY+ P +
Sbjct: 80 IGSKRDLLACAPTGSGKTIAYLFPIL 105
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +1
Query: 328 HHMKSKSTRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 507
+++ SK +N G + + F+ + + + G+K PTPIQ + P+
Sbjct: 46 NYIASKLLESNRRT--KGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLL 103
Query: 508 SLERI*LAY-QTGSGKTLAYILPAI 579
R + +TGSGKT A+++P I
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMI 128
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 34.3 bits (75), Expect = 0.023
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 337 KSKSTRNNHEVTVSGVE-VHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASL 513
K K E S +E + + +F E + +K + T IQ Q P A
Sbjct: 16 KRKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALK 75
Query: 514 ERI*L-AYQTGSGKTLAYILPAI 579
R L A +TGSGKTLA+I+P I
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLI 98
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 33.9 bits (74), Expect = 0.030
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 358 NHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIASLERI*LAY 534
N E+T S E N + FEE N + + +G+ GY+ P+ +Q++ I +
Sbjct: 8 NVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 535 QTGSGKTLAY 564
Q+G+GKT +
Sbjct: 66 QSGTGKTATF 75
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 30.7 bits (66), Expect = 0.28
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +1
Query: 535 QTGSGKTLAYILPAI 579
QTGSGKTLAY+LP +
Sbjct: 186 QTGSGKTLAYLLPIV 200
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 30.3 bits (65), Expect = 0.37
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 376 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ--GWPIASLERI*LAYQTGSG 549
S ++ P + E A+ + + G+++ TP+Q + + E + +TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 550 KTLAYILPA 576
KTLA++L A
Sbjct: 89 KTLAFLLVA 97
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 30.3 bits (65), Expect = 0.37
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 460 GYKEPTPIQAQGWPIASLE-RI*LAYQTGSGKTLAYILPAI 579
G+ +P PIQ+ P AS+ I TGSGKTLA+ +P +
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 515 KEFSWRTKRVPAKRWPTSCQPLCHIKQPTAYSER 616
K+F + + A W +PL +P+ YSE+
Sbjct: 140 KDFKYNFPKTQAPEWRRGAKPLSKTSEPSVYSEK 173
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = +1
Query: 538 TGSGKTLAYILPAI--VPH*TTNRLFGEVMV 624
TGSGKTL+Y++P + + H T RL V+V
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLRCVVIV 212
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 4.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLE--RI*LAYQTGSGKTLAYILPAI 579
F + ++ +K + EPT IQ +G LE +TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQ-EGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 4.6
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -2
Query: 249 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 103
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 102 IPVT 91
PV+
Sbjct: 198 APVS 201
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +1
Query: 319 SKDHHMKSKST---RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA 489
S H + S ST R + +TV+G+ V + + Y PD+ Q G+ Y + +
Sbjct: 139 SSFHFVTSPSTFFIRYDDNITVAGINVQDSLSYSHYQALPDF-QFGITLKEYVPSSMLPY 197
Query: 490 QG 495
+G
Sbjct: 198 KG 199
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 6.0
Identities = 8/35 (22%), Positives = 22/35 (62%)
Frame = +2
Query: 167 DLATVAIDLEDLEDLVGKKNSLEVRTCVARLGFCF 271
D++ + + + + +NS+++ +C+ ++GFCF
Sbjct: 276 DISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 196 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 38
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,522
Number of Sequences: 5004
Number of extensions: 70259
Number of successful extensions: 220
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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