Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0924
(868 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 91 9e-19
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 89 3e-18
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 89 3e-18
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 74 1e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 72 4e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 64 9e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 61 1e-09
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 60 1e-09
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 57 1e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 52 5e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 7e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 50 3e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 49 4e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 49 5e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 49 5e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 48 6e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 46 3e-05
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 46 4e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 45 8e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 44 1e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 1e-04
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 43 2e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 43 3e-04
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 40 0.003
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 39 0.005
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 39 0.005
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 38 0.007
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 38 0.009
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 38 0.009
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 37 0.015
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 37 0.015
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 37 0.020
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 36 0.026
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 36 0.046
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 35 0.081
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 35 0.081
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 34 0.14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 34 0.14
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 34 0.14
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 33 0.19
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 33 0.19
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 33 0.25
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 33 0.33
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 32 0.43
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 32 0.43
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 31 0.75
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 30 1.7
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 30 2.3
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal... 29 5.3
At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal... 29 5.3
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 7.0
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 7.0
At2g25460.1 68415.m03049 expressed protein 28 7.0
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel... 28 9.3
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel... 28 9.3
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel... 28 9.3
At3g31350.1 68416.m03990 hypothetical protein 28 9.3
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 91.1 bits (216), Expect = 9e-19
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA 531
R E+TV G ++ P++ F + FPDYV + VK G+ EPTPIQ+QGWP+A R +
Sbjct: 82 RKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIG 141
Query: 532 Y-QTGSGKTLAYILPAIVPH*TTNRLF--GEVMVRLLWSWAAYPESLAPQIQQVXCRFLG 702
+TGSGKTL+Y+LPAIV H + G+ + L+ A LA QIQQ +F G
Sbjct: 142 IAETGSGKTLSYLLPAIV-HVNAQPMLAHGDGPIVLV---LAPTRELAVQIQQEASKF-G 196
Query: 703 XTSLLFVNTVCVWWVAP 753
+S + T C++ P
Sbjct: 197 SSSK--IKTTCIYGGVP 211
Score = 41.9 bits (94), Expect = 5e-04
Identities = 35/127 (27%), Positives = 47/127 (37%)
Frame = +3
Query: 261 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYQK*SRGNCKWR*GS*SYSIL*RSKFS*LCA 440
D L PF KNFY P V + EVEEY+K + + F
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 441 TRCKDNGLQRTDAHSSSRLADS*SGKNLVGVPNGFRQNVGLHLASHCATLNNQPPIRRGD 620
K G S + G++L+G+ +L +N QP + GD
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
Query: 621 GPIALVL 641
GPI LVL
Sbjct: 172 GPIVLVL 178
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 89.4 bits (212), Expect = 3e-18
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA 531
R +++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A R +
Sbjct: 148 RTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Query: 532 Y-QTGSGKTLAYILPAIVPH*TTNRLFGEVMVRLLWSWAAYPESLAPQIQQVXCRFLGXT 708
+TGSGKTLAY+LPA+V H + G+ ++ A E LA QIQ+ +F G
Sbjct: 208 IAETGSGKTLAYLLPALV-HVSAQPRLGQDDGPIVLILAPTRE-LAVQIQEESRKF-GLR 264
Query: 709 SLLFVNTVCVWWVAP 753
S V + C++ AP
Sbjct: 265 S--GVRSTCIYGGAP 277
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 89.4 bits (212), Expect = 3e-18
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA 531
R +++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A R +
Sbjct: 148 RTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIG 207
Query: 532 Y-QTGSGKTLAYILPAIVPH*TTNRLFGEVMVRLLWSWAAYPESLAPQIQQVXCRFLGXT 708
+TGSGKTLAY+LPA+V H + G+ ++ A E LA QIQ+ +F G
Sbjct: 208 IAETGSGKTLAYLLPALV-HVSAQPRLGQDDGPIVLILAPTRE-LAVQIQEESRKF-GLR 264
Query: 709 SLLFVNTVCVWWVAP 753
S V + C++ AP
Sbjct: 265 S--GVRSTCIYGGAP 277
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +1
Query: 361 HEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LAY-Q 537
HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIA R +A +
Sbjct: 144 HEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Query: 538 TGSGKTLAYILPAIVPH*TTNRLFGEVMVRLLWSWAAYPESLAPQIQQVXCRFLGXTSLL 717
TGSGKTL Y++P + H R+ + + + LA QIQ+ +F G +S
Sbjct: 204 TGSGKTLGYLIPGFL-H--LQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF-GRSSR- 258
Query: 718 FVNTVCVWWVAP 753
++ C++ AP
Sbjct: 259 -ISCTCLYGGAP 269
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +1
Query: 361 HEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LAY-Q 537
HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIA R +A +
Sbjct: 144 HEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Query: 538 TGSGKTLAYILPAIVPH*TTNRLFGEVMVRLLWSWAAYPESLAPQIQQVXCRFLGXTSLL 717
TGSGKTL Y++P + H R+ + + + LA QIQ+ +F G +S
Sbjct: 204 TGSGKTLGYLIPGFL-H--LQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF-GRSSR- 258
Query: 718 FVNTVCVWWVAP 753
++ C++ AP
Sbjct: 259 -ISCTCLYGGAP 269
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Frame = +1
Query: 361 HEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LAY-Q 537
HE+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIA R +A +
Sbjct: 144 HEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Query: 538 TGSGKTLAYILPAIVPH*TTNRLFGEVMVRLLWSWAAYPESLAPQIQQVXCRFLGXTSLL 717
TGSGKTL Y++P + H R+ + + + LA QIQ+ +F G +S
Sbjct: 204 TGSGKTLGYLIPGFL-H--LQRIRNDSRMGPTILVLSPTRELATQIQEEAVKF-GRSSR- 258
Query: 718 FVNTVCVWWVAP 753
++ C++ AP
Sbjct: 259 -ISCTCLYGGAP 269
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 72.1 bits (169), Expect = 4e-13
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA 531
R HEVT +G + P FE + P + + + + G+ PTPIQAQ WPIA R +A
Sbjct: 418 RKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVA 477
Query: 532 Y-QTGSGKTLAYILPA--IVPH*TTNRLFGEVMVRLLWSWAAYPESLAPQIQQVXCRFLG 702
+TGSGKTL Y++PA ++ H + G ++ L A LA QIQ RF G
Sbjct: 478 IAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLIL-----APTRELATQIQDEALRF-G 531
Query: 703 XTSLLFVNTVCVWWVAP 753
+S ++ C++ AP
Sbjct: 532 RSSR--ISCTCLYGGAP 546
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 64.5 bits (150), Expect = 9e-11
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +1
Query: 289 KTFMIHILQFSKDHHMKSKSTRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 468
K F + S ++ R + VSG +VH P++ FE+ F + +K Y+
Sbjct: 190 KDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYE 249
Query: 469 EPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYILPAIV 582
+PT IQ Q PI R + +TGSGKT A++LP IV
Sbjct: 250 KPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIV 288
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI--ASLERI* 525
R +TV+G ++ PI+ F + FP + + +K G PTPIQ QG P+ + + I
Sbjct: 80 RKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIG 139
Query: 526 LAYQTGSGKTLAYILPAIV 582
+A+ TGSGKTL ++LP I+
Sbjct: 140 IAF-TGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI--ASLERI* 525
R + V+G ++ PI+ F++ FP V +K G +PTPIQ QG P+ A + I
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 526 LAYQTGSGKTLAYILPAIV 582
+A+ TGSGKTL ++LP I+
Sbjct: 189 IAF-TGSGKTLVFVLPMIM 206
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +1
Query: 289 KTFMIHILQFSKDHHMKSKSTRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 468
K F I + S+ + R E+ V G +V PIQ++ + + +K + Y+
Sbjct: 358 KNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYE 417
Query: 469 EPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYILPAI 579
+P PIQAQ PI R + +TGSGKTL ++LP +
Sbjct: 418 KPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 455
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 510 SGKNLVGVPN-GFRQNVGLHLASHCATLNNQPPIRRGDGPIALVL 641
SG++ +GV G + +G L + +QPP+ GDGPI LV+
Sbjct: 432 SGRDCIGVAKTGSGKTLGFVLPM-LRHIKDQPPVEAGDGPIGLVM 475
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Frame = +1
Query: 289 KTFMIHILQFSKDHHMKSKSTRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYK 468
K F I + S+ + + R E+ V G +V PI+++ + + +K + Y+
Sbjct: 491 KNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYE 550
Query: 469 EPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYILPAI 579
+P PIQ Q PI R + +TGSGKTL ++LP +
Sbjct: 551 KPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPML 588
Score = 34.3 bits (75), Expect = 0.11
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 1/130 (0%)
Frame = +3
Query: 255 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYQK*SRGNCKWR*GS*SYSIL*RSKFS*L 434
D + +PF KNFY + + + EV Y+K + ++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 435 CATRCKDNGLQRTDAHSSSRLADS*SGKNLVGVPN-GFRQNVGLHLASHCATLNNQPPIR 611
K ++ + L SG++ +GV G + +G L + +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPM-LRHIKDQPPVE 598
Query: 612 RGDGPIALVL 641
GDGPI LV+
Sbjct: 599 AGDGPIGLVM 608
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 52.0 bits (119), Expect = 5e-07
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA 531
R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ +R +
Sbjct: 296 REDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIG 355
Query: 532 Y-QTGSGKTLAYILPAI 579
+TGSGKT A++LP +
Sbjct: 356 IAETGSGKTAAFVLPML 372
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Frame = +1
Query: 349 TRNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIASLE 516
+R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI
Sbjct: 119 SRKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSG 178
Query: 517 RI*LA-YQTGSGKTLAYILPAIV 582
R A TGSGKT A+I P ++
Sbjct: 179 RECFACAPTGSGKTFAFICPMLI 201
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 370 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLER-I*LAYQTGS 546
TV GV H F E N + + +T+GYK+PTPIQA P+A R + + TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 547 GKTLAYILPAI 579
GKT A+ LP +
Sbjct: 216 GKTAAFALPTL 226
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 49.2 bits (112), Expect = 4e-06
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 VKTMGYKEPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYILPAIV 582
V + G+ P+PIQAQ WPIA R +A +TGSGKTL Y++P +
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM 289
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 361 HEVTVSGVEVHNPIQYFEEANFPD 432
HE+TVSG +V P+ FE P+
Sbjct: 147 HEITVSGGQVPPPLMSFEATGLPN 170
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 367 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTG 543
V SG +V P+ F + + D + ++ Y PTP+Q PI ER +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 544 SGKTLAYILPAI 579
SGKT A+ P I
Sbjct: 199 SGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 48.8 bits (111), Expect = 5e-06
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 367 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTG 543
V SG +V P+ F + + D + ++ Y PTP+Q PI ER +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 544 SGKTLAYILPAI 579
SGKT A+ P I
Sbjct: 199 SGKTAAFCFPII 210
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 48.4 bits (110), Expect = 6e-06
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Frame = +1
Query: 337 KSKSTRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP--I 504
+ +S + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 505 ASLERI*LAYQTGSGKTLAYILPAIVPH*TTNRLFG 612
+ I +A +TGSGKTLA+ +PAI+ N+ G
Sbjct: 150 DGRDLIGIA-KTGSGKTLAFGIPAIMHVLKKNKKIG 184
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 319 SKDHHMKSKSTRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 498
S H + + + V G V P+ F P + ++T GY PTPIQ Q
Sbjct: 82 SSSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAI 141
Query: 499 PIASLERI*LA-YQTGSGKTLAYILPAI 579
P A + LA TGSGKT ++++P I
Sbjct: 142 PAALTGKSLLASADTGSGKTASFLVPII 169
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +1
Query: 367 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTG 543
+ SG V P+ F E + + + ++ Y +PTP+Q PI + R +A QTG
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 544 SGKTLAYILPAI 579
SGKT A+ P I
Sbjct: 194 SGKTAAFCFPII 205
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 44.8 bits (101), Expect = 8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASL-ERI*LAYQTGSGKTLAYILPAI 579
FE + D + +K MG+ T IQA+ P + E + A +TGSGKTLA+++PA+
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWP--IASLERI*LAYQTGSGKTLAYILPAI 579
FE N V +K GYK PTPIQ + P ++ ++ + +A +TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMA-RTGSGKTAAFLIPML 87
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 367 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTG 543
+ SG V P+ F E + + + ++ Y +PTP+Q PI R +A QTG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 544 SGKTLAYILPAI 579
SGKT A+ P I
Sbjct: 207 SGKTAAFCFPII 218
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 304 HILQFSKDHHMKSKSTRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 483
H+ + +K + S E + + ++ F+E + V ++ + + PT I
Sbjct: 79 HLKESAKPPQQRPSSVVGVEEESSIRKKSKKLVENFQELGLSEEVMGALQELNIEVPTEI 138
Query: 484 QAQGWPIASLER--I*LAYQTGSGKTLAYILPAI 579
Q G P A +ER + L TGSGKTLAY+LP +
Sbjct: 139 QCIGIP-AVMERKSVVLGSHTGSGKTLAYLLPIV 171
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWP--IASLERI*LAYQTGSGKTLAYILPAI 579
FEE PD + ++ G+ PT +Q+ P I + + +Y TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSY-TGSGKTLAYLLPIL 169
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWP--IASLERI*LAYQTGSGKTLAYILPAI 579
FE ++ + K +G ++PTP+Q P +A + + LA QTGSGKT A+ LP +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLA-QTGSGKTAAFALPIL 117
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIASLERI*LAYQTGSGKTLAYILPAI 579
F+ + + +K MG++ T IQA P+ + + A +TGSGKTLA+++PA+
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 38.7 bits (86), Expect = 0.005
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIASLERI*LAYQTGSGKTLAYILPAI 579
F E + + + +K + P IQA + P+ + +A Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 400 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*L-AYQTGSGKTLAYILPA 576
++ F + D ++G+K Y + T +Q+ P A R L A +TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 577 I 579
+
Sbjct: 130 L 130
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +1
Query: 385 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA--SLERI*LAYQTGSGKTL 558
E + ++ F E + + + + +G+K P+ IQA+ P A + I LA QTGSGKT
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLA-QTGSGKTG 61
Query: 559 AYILPAI 579
A+ +P +
Sbjct: 62 AFAIPIL 68
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 37.9 bits (84), Expect = 0.009
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 352 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP-IASLERI*L 528
RN+ E E P + FEE + + + G ++PT IQ P I + +
Sbjct: 30 RNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVA 88
Query: 529 AYQTGSGKTLAYILPAI 579
+TGSGKTLAY+LP +
Sbjct: 89 RAKTGSGKTLAYLLPLL 105
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTGSGKTLAYILPAI 579
FE+ + G+ G++ P+PIQ + PIA R LA + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 190
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 37.1 bits (82), Expect = 0.015
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTGSGKTLAYILPAI 579
FE+ + G+ G++ P+PIQ + PIA R LA + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVL 190
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 457 MGYKEPTPIQAQGWPIASLER-I*LAYQTGSGKTLAYILPAI 579
MG++ PT +QAQ P+ R + + TG+GKT+AY+ P I
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +1
Query: 397 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIASLERI*LAYQTGSGKT 555
PI+ F++ D V +GV GYK+P+ IQ + PI + Q+G+GKT
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKT 73
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 35.5 bits (78), Expect = 0.046
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 427 PDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYIL 570
P+++ ++ +G+ PT IQ + P R + + QTGSGKTL Y+L
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLL 132
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 34.7 bits (76), Expect = 0.081
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 460 GYKEPTPIQAQGWP-IASLERI*LAYQTGSGKTLAYILPAI 579
G++ TP+QA+ P + S + + + TGSGKTLA++LP I
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 75
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 34.7 bits (76), Expect = 0.081
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +1
Query: 460 GYKEPTPIQAQGWP-IASLERI*LAYQTGSGKTLAYILPAI 579
G++ TP+QA+ P + S + + + TGSGKTLA++LP I
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFI 76
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTGSGKTLAYILPAI 579
FE+ + +G+ G+++P+PIQ + PIA LA + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTGSGKTLAYILPAI 579
FE+ + +G+ G+++P+PIQ + PIA LA + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVL 183
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LA-YQTGSGKTLAYILPAI 579
FE+ + +G+ G+++P+PIQ + PIA LA + G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTL 213
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 409 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYILPAI 579
F++ +G++ G+K T +Q P+ + LA +TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI 139
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +1
Query: 436 VQQGVKTMGYKEPTPIQAQGWPIASLER--I*LAYQTGSGKTLAYILPAI 579
+ + + + +KEPT IQ + +A+ + + A +TGSGKTLA+ LP +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 442 QGVKTMGYKEPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYILPAI 579
+ +K GY+ T +Q PI + LA +TG+GKT+A++LP+I
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI 113
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +1
Query: 442 QGVKTMGYKEPTPIQAQGWPIASLERI*LAY-QTGSGKTLAYILPAI 579
+ +K G++ T +Q PI + LA +TG+GKT+A++LPAI
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +1
Query: 313 QFSKDHHMKSKSTRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 492
+ D + K + ++ V VEV NP + +++ +K G + PIQA
Sbjct: 67 EVKSDSSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQAS 125
Query: 493 GWPIASLERI*LA--YQTGSGKTLAYILPAI 579
+ + L+ L +TG GKTLA++LP +
Sbjct: 126 TFDMV-LDGADLVGRARTGQGKTLAFVLPIL 155
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 32.3 bits (70), Expect = 0.43
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 430 DYVQQGVKTMGYKEPTPIQAQGWP-IASLERI*LAYQTGSGKTLAYILPAIVPH*TTNRL 606
D V ++ G+ P+ QA P I S + + +A +TGSGKT Y+ P I+ T L
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAP-IIDQLTNTAL 147
Query: 607 FGEVMVR 627
EV R
Sbjct: 148 DSEVTNR 154
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +1
Query: 475 TPIQAQGWPI-ASLERI*LAYQTGSGKTLAYILPAI 579
TP+QA P+ S + + + TGSGKTLA+++P +
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 191 LEDLEDLVGKKNSLEVRTCVARLGFCFAPTF 283
+ D++ +GK V C AR+G CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -1
Query: 292 FLLKGWSETESQSGDACSDLQRILFSHQILQILQIYCH 179
+L + + E +Q+G + Q +LF ++L +L+IY H
Sbjct: 982 YLAQIFKEKRNQAGGETAQSQLVLFKLRVLSLLEIYLH 1019
>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
domain-containing protein similar to beta-glucuronidase
precursor [Scutellaria baicalensis] GI:8918740; contains
Pfam profile PF03662: Glycosyl hydrolase family 79,
N-terminal domain
Length = 536
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +3
Query: 510 SGKNLVGVPNGFRQNVGLHLASHCATLNNQPPIRRGDGPIALVLGGLPR-EFSTTNSASX 686
+ L G PNG Q HL + L++Q + G+ +G LP E NS
Sbjct: 455 ASSQLFGGPNGVIQREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEP 514
Query: 687 LQIFGTXIFIVRKHRVCLVGCS 752
+ I I V V + C+
Sbjct: 515 ITIAPYSIVFVHMRNVVVPACA 536
>At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal
domain-containing protein similar to beta-glucuronidase
precursor [Scutellaria baicalensis] GI:8918740; contains
Pfam profile PF03662: Glycosyl hydrolase family 79,
N-terminal domain
Length = 401
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = +3
Query: 510 SGKNLVGVPNGFRQNVGLHLASHCATLNNQPPIRRGDGPIALVLGGLPR-EFSTTNSASX 686
+ L G PNG Q HL + L++Q + G+ +G LP E NS
Sbjct: 320 ASSQLFGGPNGVIQREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEP 379
Query: 687 LQIFGTXIFIVRKHRVCLVGCS 752
+ I I V V + C+
Sbjct: 380 ITIAPYSIVFVHMRNVVVPACA 401
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +1
Query: 436 VQQGVKTMGYKEPTPIQAQGWPIA----SLER-I*LAYQTGSGKTLAYILPAI 579
+++ ++ MG P+Q W ER I + TGSGKTL+Y LP +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIV 84
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 219 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 40
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 7.0
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 166 EKNYRRICCLLQIWNHRFHGYY 101
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 710
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 780 KSRGLAXXXRSNPPNTHGVYEQ*RCXSQKSAANLLNLWC*TLWVG 646
KS+ A +NPP G+Y Q S+ N + +C LW G
Sbjct: 323 KSKCRADLDDNNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWG 367
>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 780 KSRGLAXXXRSNPPNTHGVYEQ*RCXSQKSAANLLNLWC*TLWVG 646
KS+ A +NPP G+Y Q S+ N + +C LW G
Sbjct: 330 KSKCRADLDDNNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWG 374
>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
cyclic nucleotide-gated channel (CNGC5) identical to
cyclic nucleotide and calmodulin-regulated ion channel
(cngc5) GI:4581205 from [Arabidopsis thaliana]
Length = 717
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 780 KSRGLAXXXRSNPPNTHGVYEQ*RCXSQKSAANLLNLWC*TLWVG 646
KS+ A +NPP G+Y Q S+ N + +C LW G
Sbjct: 330 KSKCRADLDDNNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWG 374
>At3g31350.1 68416.m03990 hypothetical protein
Length = 166
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 382 RHLQLPRDYFWYSST 338
R +QLP D+FWYS T
Sbjct: 145 RSIQLPDDWFWYSLT 159
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,593,059
Number of Sequences: 28952
Number of extensions: 375242
Number of successful extensions: 1102
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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