Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0923
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    88   1e-18
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    28   1.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.2  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 39/85 (45%), Positives = 58/85 (68%)
 Frame = +2

Query: 242 FCPVRSDLDAAXQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKIT 421
           F    SDLDA  +  L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+LDK+   ++ 
Sbjct: 431 FAQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVV 490

Query: 422 AXXKEFTQHIKTSHQGLLSTIAKDG 496
               +F  ++++S   ++  I K+G
Sbjct: 491 EFEHKFIPYLRSSGAEIMEAIRKEG 515



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = +3

Query: 135 LXXTRVGICCLRPRAMKAXGPVPMKLELAQYREVAXFAQF 254
           L  +RVG    + +AMK      +KL LAQYREVA FAQF
Sbjct: 397 LSVSRVGSAA-QVKAMKQVAG-QIKLFLAQYREVASFAQF 434


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 692 ETNSSIAFIWAVLNVDTIMECIYLCW 769
           ET++ + F+W+++ +  I    Y CW
Sbjct: 183 ETSARLGFLWSIVYLHVIWFLYYACW 208


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 740 YQHSIQPI*MLYYYSSH 690
           Y HS++ + ++YYY SH
Sbjct: 803 YMHSLRSLFVVYYYESH 819


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,511
Number of Sequences: 5004
Number of extensions: 49386
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)