Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0923
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial...    69   4e-12
At5g27220.1 68418.m03247 protein transport protein-related low s...    28   6.3  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    28   6.3  

>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
           putative very strong similarity to SP|P23413 ATP
           synthase alpha chain, mitochondrial (EC 3.6.3.14)
           {Brassica campestris}; contains Pfam profiles PF00006:
           ATP synthase alpha/beta family nucleotide-binding
           domain, PF00306: ATP synthase ab C terminal, PF02874:
           ATP synthase alpha/beta family beta-barrel domain
          Length = 777

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 33/71 (46%), Positives = 43/71 (60%)
 Frame = +2

Query: 242 FCPVRSDLDAAXQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKIT 421
           F    SDLDAA Q LLNRG RLTE+ KQ QY P+ IE+Q+ +IY  V G  D++   +I+
Sbjct: 676 FAQFGSDLDAATQALLNRGARLTEVPKQPQYAPLPIEKQILVIYAAVNGFCDRMPLDRIS 735

Query: 422 AXXKEFTQHIK 454
              K     +K
Sbjct: 736 QYEKAIPNSVK 746



 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +3

Query: 207 KLELAQYREVAXFAQF 254
           KLELAQYREVA FAQF
Sbjct: 664 KLELAQYREVAAFAQF 679


>At5g27220.1 68418.m03247 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1181

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 334 ILSLLEELSKTHSSVEQLLXSGIQVRTNWA 245
           ++ LLEEL +   S + LL   +QV T W+
Sbjct: 904 LIPLLEELPRVVKSSKHLLSDALQVATRWS 933


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
            factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 422  AXXKEFTQHIKTSHQGLLSTIAKDGQI 502
            A  ++  QH  T H+GLLST  KDG I
Sbjct: 937  AVCQQLFQHCHTHHEGLLST-KKDGMI 962


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,773
Number of Sequences: 28952
Number of extensions: 261292
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)