Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0922
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   130   2e-31
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   1.1  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   1.1  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    29   1.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   2.0  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   3.4  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    27   4.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   4.5  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    26   6.0  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   7.9  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  130 bits (315), Expect = 2e-31
 Identities = 65/149 (43%), Positives = 89/149 (59%)
 Frame = +1

Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
           + +G+RRK+TV IVL+D+   D   R+             D+V+I PCP +KY +R+ +L
Sbjct: 78  VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137

Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHHFASWA 600
           P+ D+VEGLTG+LF+VYLKPYF+EAYRPI         G+      K        F   +
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVS 197

Query: 601 PDTVIHCDGEPIKREEEXEALNAVGYXDI 687
            DT+IH +GEPI RE+E  +L  VGY DI
Sbjct: 198 QDTIIHWEGEPINREDEESSLAEVGYDDI 226



 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +2

Query: 71  NKMADNKSPDDLSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 250
           N   D  S +D + AILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++K
Sbjct: 21  NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80

Query: 251 G 253
           G
Sbjct: 81  G 81


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -3

Query: 439 QLNHQLAVCGLV---FHISLKDTERWI 368
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -3

Query: 439 QLNHQLAVCGLV---FHISLKDTERWI 368
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 96  LMIYRXRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 209
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 409 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 299
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 132 TDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRATPQ 263
           T P VS+  + +  + QS  F R   S +N  VVT S S  TP+
Sbjct: 74  TPPPVSMGYRYARSSKQS--FQRED-SGYNDDVVTNSSSHRTPR 114


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 566 DHFELDGAHAPADH-EGVVTRIGR*ASMKYGFKYTSNRLPVRPSTESSIGSMWTRF 402
           DH  L  +H PA+  +  +  I   A++  G   T   +PV P+   ++G + TRF
Sbjct: 355 DHCYLQLSHLPAEILKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRF 410


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 155 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNAAR 265
           E+AV D+N+ ++L+  +  +    RGD  ++ G+  R
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLER 283


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 959

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
 Frame = +1

Query: 403  KRVHILPIDDSVEGLTGN-LFEVYLK-----PYFMEAYRPILVTTPSWSAGACAPSSSKW 564
            K+VH+L    +  G TG+ + ++ LK     PY  E     L +   W      PS S +
Sbjct: 861  KKVHVLCGKKASLGSTGSSISQLLLKLLADTPYLKEGVEVYLKSFLLWIQ---EPSKSHY 917

Query: 565  SKQIHHHFASW 597
            +  I H F +W
Sbjct: 918  NANIFHDFINW 928


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 95  PD-DLSXAILRRKDRPNRLIVEEAVSD 172
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,589,575
Number of Sequences: 5004
Number of extensions: 71933
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)