Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0922
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 157 8e-39
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 153 2e-37
08_02_0657 - 19749835-19751942,19753123-19753561 117 1e-26
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 32 0.67
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397... 29 3.6
02_01_0462 + 3332464-3332470,3333606-3335806 29 4.7
07_03_0500 - 18798893-18799893,18801616-18801701,18801742-188018... 29 6.3
04_01_0366 - 4823980-4824249 28 8.3
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 28 8.3
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 157 bits (382), Expect = 8e-39
Identities = 78/152 (51%), Positives = 97/152 (63%)
Frame = +1
Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
L +G++RK+T+CIVL+DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHHFASWA 600
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ G K + + A
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVA 184
Query: 601 PDTVIHCDGEPIKREEEXEALNAVGYXDIRAV 696
PDT I CDGEPIKRE+E E L+ VGY D+ V
Sbjct: 185 PDTEIFCDGEPIKREDE-ERLDEVGYDDVGGV 215
Score = 76.2 bits (179), Expect = 3e-14
Identities = 36/58 (62%), Positives = 43/58 (74%)
Frame = +2
Query: 80 ADNKSPDDLSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
+D K D S AIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKG
Sbjct: 11 SDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKG 68
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 153 bits (371), Expect = 2e-37
Identities = 76/152 (50%), Positives = 96/152 (63%)
Frame = +1
Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
L +G++RK+T+CIVL+D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHHFASWA 600
PIDD+VEG+TGNLF+ +LKPYF+EAYRP+ G K + + A
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVA 184
Query: 601 PDTVIHCDGEPIKREEEXEALNAVGYXDIRAV 696
PDT I CDGEPIKRE+E E L+ VGY D+ V
Sbjct: 185 PDTEIFCDGEPIKREDE-ERLDEVGYDDVGGV 215
Score = 79.8 bits (188), Expect = 3e-15
Identities = 40/58 (68%), Positives = 44/58 (75%)
Frame = +2
Query: 80 ADNKSPDDLSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
AD K D S AIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKG
Sbjct: 11 ADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKG 68
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 117 bits (281), Expect = 1e-26
Identities = 60/152 (39%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Frame = +1
Query: 247 QGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 426
+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 427 DDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGAC-APSSSKWSKQIHHHFASWAP 603
DDSVEG++G+LFE YLKPYFM+A RP+ G A + ++ A
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFLVRGHMHAVEFKVMDTEPNNEPVIVAG 189
Query: 604 DTVIHCD-GEPIKREEEXEALNAVGYXDIRAV 696
DT I CD G+P+KRE+E E L+ GY D+ V
Sbjct: 190 DTEIFCDEGDPVKREDE-ERLDGPGYDDVGGV 220
Score = 52.4 bits (120), Expect = 4e-07
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 5/61 (8%)
Frame = +2
Query: 101 DLSXAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGNAAR 265
D S AIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 266 K 268
+
Sbjct: 76 E 76
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 31.9 bits (69), Expect = 0.67
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 416 YCQLMIQLRVLLAIYSKYT*-SRTSWRLTVRSS*RHLHGPRGHARRRVQSGRNRSITILH 592
+C+ IQ+ A + ++ S L SS HLHG G RR + +GR R+I +L
Sbjct: 1228 FCEKKIQIPPESACFIEFPDESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLG 1287
Query: 593 RG 598
G
Sbjct: 1288 HG 1289
>03_01_0530 +
3971990-3972331,3972415-3972489,3972608-3972661,
3972747-3972825,3972927-3973054,3973178-3973261,
3973344-3973427,3973518-3973669,3973810-3973960,
3974675-3974746,3975708-3975749
Length = 420
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 702 KQLGAN*GRWVDLPTASILSRFKGYWXXXLPRRHFSMVRGPPWY 833
+Q+G G ++ T L +G+W + +R + G PWY
Sbjct: 291 RQIGEMEGVLLEAETGDYLGTHRGFWFYTIGQRQGLRLPGGPWY 334
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 152 VEEAVSDDNSVVAL---SQAKMEQLQLFRGDTVLLKGNAARKPFASCSQTII 298
+EE V N +V S A+M+QL F D + G+ + F++C+Q +I
Sbjct: 252 LEELVLSSNRLVGSLPPSFARMQQLSFFAIDNNYINGSIPLEMFSNCTQLMI 303
>07_03_0500 -
18798893-18799893,18801616-18801701,18801742-18801805,
18802640-18802853
Length = 454
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 149 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGNAARKPFAS 280
++EEA+ DN +A S+ + + G TV+ N R+ FA+
Sbjct: 377 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFAA 420
>04_01_0366 - 4823980-4824249
Length = 89
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 559 KWSKQIHHHFASWAPDTVIHCDGEPIKRE-EEXEALNAVGYXDIRAVVANNWGQIKG 726
+WS +H +W+ T P+ EE EA AVG IRA WG+ G
Sbjct: 29 RWSGSLHR--GTWSSVTAGSTPPTPVAAAAEEAEADAAVGERWIRAASVRVWGKRSG 83
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 713 GKLREMGGFANCVNPFTFQGL 775
G+L+ +GGF+NC+ F F G+
Sbjct: 211 GRLQGIGGFSNCLFTFLFAGV 231
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,041,578
Number of Sequences: 37544
Number of extensions: 550572
Number of successful extensions: 1448
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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