Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0922
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         87   1e-17
SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)                 30   2.1  
SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)                    29   3.7  
SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21)               28   8.5  
SB_19245| Best HMM Match : ADK (HMM E-Value=0)                         28   8.5  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 40/52 (76%), Positives = 48/52 (92%)
 Frame = +2

Query: 98  DDLSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
           D+L+ AIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KG
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKG 56



 Score = 58.4 bits (135), Expect = 7e-09
 Identities = 24/30 (80%), Positives = 27/30 (90%)
 Frame = +1

Query: 598 APDTVIHCDGEPIKREEEXEALNAVGYXDI 687
           APDTVIHC+GEP+KREEE E+LN VGY DI
Sbjct: 131 APDTVIHCEGEPVKREEEEESLNEVGYDDI 160



 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = +3

Query: 516 DTFMVRGGMRAVEFKVVETDPSPFCIV 596
           D F+VRGGMRAVEFKV+ETDPSP+CIV
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIV 130



 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = +1

Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 369
           L +G++RK+TVCIVLSDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_23578| Best HMM Match : RPE65 (HMM E-Value=4.9e-17)
          Length = 512

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
 Frame = +1

Query: 442 GLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIH-------HHFASWA 600
           G+T N F +   PYFM   + +      W+   C     K   +IH          A++ 
Sbjct: 241 GMTENFFILLENPYFMSVPKVLTKNVFGWAFSKCLYWDPKCQTRIHVMCKKTGEEMATFT 300

Query: 601 PDTVI---HCDGEPIKREEEXEALNAVGYXDIRAV 696
            D V    H +    K E     ++ VGY D + V
Sbjct: 301 TDPVFVFHHINAFENKEEIVEIVVDVVGYKDTKLV 335


>SB_52189| Best HMM Match : DUF454 (HMM E-Value=5.7)
          Length = 203

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +1

Query: 538 ACAPSSSKWSKQIHHHFASWAPDTVIHCDGEPIKREEEXEALNAVGYXDIRAVVAN 705
           AC PSSS+W +Q +        D V H  G P+  + +    N     DI+ +  +
Sbjct: 144 AC-PSSSRWPRQAYQSTC----DEVFHLSGSPLVHDNDDNNDNKSNNHDIKTIATS 194


>SB_42483| Best HMM Match : ADK_lid (HMM E-Value=1.5e-21)
          Length = 110

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 732 VDLPTASILSRFKGYWXXXLPRRHFSMVRGPPWYRGKN 845
           +D+P A+I+ R K  W   +  R +++   PP   GK+
Sbjct: 1   MDVPFATIVDRIKQRWVHAVSGRVYNLEFNPPKVEGKD 38


>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
          Length = 188

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 732 VDLPTASILSRFKGYWXXXLPRRHFSMVRGPPWYRGKN 845
           +D+P A+I+ R K  W   +  R +++   PP   GK+
Sbjct: 137 MDVPFATIVDRIKQRWVHAVSGRVYNLEFNPPKVEGKD 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,833,393
Number of Sequences: 59808
Number of extensions: 577221
Number of successful extensions: 1412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)