Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0922
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   153   1e-37
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   153   1e-37
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   149   3e-36
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   1.3  
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.7  
At3g22290.1 68416.m02816 expressed protein                             28   6.9  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  153 bits (372), Expect = 1e-37
 Identities = 74/152 (48%), Positives = 96/152 (63%)
 Frame = +1

Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
           L +G++RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHHFASWA 600
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+         G       K  +     +   A
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181

Query: 601 PDTVIHCDGEPIKREEEXEALNAVGYXDIRAV 696
           PDT I C+GEP+KRE+E E L+ VGY D+  V
Sbjct: 182 PDTEIFCEGEPVKREDE-ERLDEVGYDDVGGV 212



 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 36/58 (62%), Positives = 47/58 (81%)
 Frame = +2

Query: 80  ADNKSPDDLSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
           +D+K+  D S AIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KG
Sbjct: 8   SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKG 65


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  153 bits (371), Expect = 1e-37
 Identities = 74/152 (48%), Positives = 96/152 (63%)
 Frame = +1

Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
           L +G++RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHHFASWA 600
           P+DD+VEG+TGNLF+ YLKPYF+EAYRP+         G       K  +     +   A
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVA 181

Query: 601 PDTVIHCDGEPIKREEEXEALNAVGYXDIRAV 696
           PDT I C+GEP+KRE+E E L+ VGY D+  V
Sbjct: 182 PDTEIFCEGEPVKREDE-ERLDDVGYDDVGGV 212



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/58 (65%), Positives = 48/58 (82%)
 Frame = +2

Query: 80  ADNKSPDDLSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
           +D+KS  D S AIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L+KG
Sbjct: 8   SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKG 65


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  149 bits (360), Expect = 3e-36
 Identities = 71/152 (46%), Positives = 95/152 (62%)
 Frame = +1

Query: 241 LAQGQRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 420
           L +G++RK+TVCI L+D+ C + KIRM             DV+S+  CP VKYG RVHIL
Sbjct: 63  LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122

Query: 421 PIDDSVEGLTGNLFEVYLKPYFMEAYRPILVTTPSWSAGACAPSSSKWSKQIHHHFASWA 600
           P+DD++EG++GN+F+ YLKPYF+EAYRP+         G       K  +     +   A
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVA 182

Query: 601 PDTVIHCDGEPIKREEEXEALNAVGYXDIRAV 696
           PDT I C+GEPIKRE+E E L+ VGY D+  V
Sbjct: 183 PDTEIFCEGEPIKREDE-ERLDEVGYDDVGGV 213



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 34/59 (57%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
 Frame = +2

Query: 80  ADNK-SPDDLSXAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKG 253
           +D+K +  D S AIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L+KG
Sbjct: 8   SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKG 66


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 232 TTEELKLLHFGL*KCHD*VVIAD 164
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 387 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 292
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At3g22290.1 68416.m02816 expressed protein 
          Length = 354

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +1

Query: 616 HCDGEPIKREEEXEALNAVGYXDIRAVVANNWGQIKGDGWICQLRQSFHVSRAIG 780
           H   E  K E E EALN +G+      +     Q   DG  C++     V R  G
Sbjct: 137 HDGKEEHKNETETEALNILGFDQAAETMIKKVKQALADGEGCRVYGVLDVQRVAG 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,236
Number of Sequences: 28952
Number of extensions: 416280
Number of successful extensions: 1011
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)