Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0920
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    31   1.1  
11_04_0154 + 14172294-14172459,14172993-14173054,14174781-141748...    30   2.0  
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    30   2.6  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
 Frame = +3

Query: 417 FFDAATEEREHATKLIDYLLMRG---KLTGSVTDSSRTGPPQTRRGRAAHQPSSTPSSWR 587
           F +++ EER+HA KL+ Y  MRG   +L   VT  +    P+  +G A +      +  +
Sbjct: 130 FKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPE--KGDALYAMELALALEK 187

Query: 588 VXXXXXXXXXXXXXXXXFNDYHLVDYLXGXFLDEQYXGQRXLAGKASTSRR 740
           +                 ND  L D++   FL+EQ    + ++   +  RR
Sbjct: 188 LVNEKLHNLHSVASRC--NDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 236



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 301 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 417
           C   + +QI  E  AS  Y ++ AYF  D V   GFA +
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKF 129


>11_04_0154 +
           14172294-14172459,14172993-14173054,14174781-14174859,
           14174964-14175164,14175420-14175610
          Length = 232

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 505 PTHHVQGPRKHVVGERRISPRAR 573
           P H+  GPR H+ G RR  PRAR
Sbjct: 16  PNHYATGPRTHLPGPRR-KPRAR 37


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 417 FFDAATEEREHATKLIDYLLMRG 485
           F +++ EER+HA KLI Y  MRG
Sbjct: 162 FKESSDEERDHAEKLIKYQNMRG 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,176,049
Number of Sequences: 37544
Number of extensions: 399651
Number of successful extensions: 1005
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)