Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0920
(838 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012) 33 0.29
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 30 2.0
SB_17318| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 8.2
>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 295 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 417
+ C + KQI E+ AS YL+M +F D V PGF Y
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKY 237
Score = 29.5 bits (63), Expect = 3.5
Identities = 28/114 (24%), Positives = 41/114 (35%)
Frame = +3
Query: 399 PRLREXFFDAATEEREHATKLIDYLLMRGKLTGSVTDSSRTGPPQTRRGRAAHQPSSTPS 578
P + F A+ EEREHA KL+ + RG G + P + G S +
Sbjct: 232 PGFHKYFLKASHEEREHAEKLMKFQNERG---GRIVLQDIKKPEKDEWG--CGMDSIQVA 286
Query: 579 SWRVXXXXXXXXXXXXXXXXFNDYHLVDYLXGXFLDEQYXGQRXLAGKASTSRR 740
D + D++ G FL EQ + LAG + +R
Sbjct: 287 LDLEKHVNQALLDLHKIAEKHGDAQMTDFIEGNFLTEQVEAIKELAGHLTNLKR 340
>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
Length = 126
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 313 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 408
+ KQI +E+ A YL+M +F D +N PGF
Sbjct: 38 INKQINKELYAHYTYLSMAFHFDRDDINLPGF 69
>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 32.3 bits (70), Expect = 0.50
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 399 PRLREXFFDAATEEREHATKLIDYLLMRG 485
P + F +A+ EEREHA KL + L RG
Sbjct: 179 PGFHKYFMEASHEEREHAEKLAKFQLQRG 207
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 313 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 417
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 184
>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 31.9 bits (69), Expect = 0.66
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 295 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 408
+ C + KQI E+ AS Y +M YF + V+ PGF
Sbjct: 10 EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGF 47
>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 313 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 417
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKY 169
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 399 PRLREXFFDAATEEREHATKLIDYLLMRG 485
P + F A+ EEREHA KL + L RG
Sbjct: 164 PGFHKYFMKASHEEREHAEKLAKFQLQRG 192
>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 313 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 417
+ KQI E+ AS Y++M +F D V PGF Y
Sbjct: 18 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKY 52
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 399 PRLREXFFDAATEEREHATKLIDYLLMRG 485
P + F A+ EEREHA KL + L RG
Sbjct: 47 PGFHKYFIKASHEEREHAEKLAKFQLQRG 75
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +3
Query: 261 RHHQG*VAHHGADLLQHDEETDPGGSG 341
RHHQ AHHG L+HD E D GSG
Sbjct: 811 RHHQH-GAHHG---LKHDTENDASGSG 833
>SB_17318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 261
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 488 ADRLRNRLITYRAPANTSWESGASALEHALKLESD 592
+DR R +TY + +W SG L H++K++ D
Sbjct: 157 SDRARQN-VTYHCLNSAAWSSGKGDLNHSIKIKGD 190
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 510 SSRTGPPQTRRGRAAHQPSSTPSS 581
++RTGPPQ+R+ H+ S+T S
Sbjct: 419 ANRTGPPQSRQAVPRHRTSATADS 442
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,648,150
Number of Sequences: 59808
Number of extensions: 418646
Number of successful extensions: 948
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -