Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0920
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    31   0.77 
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    29   3.1  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    28   9.5  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 28/114 (24%), Positives = 43/114 (37%)
 Frame = +3

Query: 399 PRLREXFFDAATEEREHATKLIDYLLMRGKLTGSVTDSSRTGPPQTRRGRAAHQPSSTPS 578
           P + + F + + EEREHAT+L+    +RG   G V       P     G A     +  +
Sbjct: 45  PNIAKFFKEQSDEEREHATELMRVQNLRG---GRVVLQDIQKPENDEWGTALKAFEAALA 101

Query: 579 SWRVXXXXXXXXXXXXXXXXFNDYHLVDYLXGXFLDEQYXGQRXLAGKASTSRR 740
             +                  ND HL D++   +LDEQ       A   +  +R
Sbjct: 102 LEK--FNNESLLKLHSTAGNHNDAHLTDFIEEKYLDEQVKSINEFARMVANLKR 153



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 313 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXY 417
           + KQI  E+ AS  YL+M  YF  D V  P  A +
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKF 50


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
           protein ZK250.9 protein.
          Length = 1466

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 286 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 432
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
           protein Y16E11A.2 protein.
          Length = 1466

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 286 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 432
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
           protein F59H6.5 protein.
          Length = 1486

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 286 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 432
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical protein
            F44E2.4 protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 542  TTCLRGPCT**VGYGACQLSPHEQVVNELGRVLAFFSRSIEEXFAKPGRFTVSIEK 375
            T+C+   C    G G CQLS   + +++   +   F ++ E  FA+  R T+S  K
Sbjct: 882  TSCVVSSCMVEAGRGICQLSDPAKAIDD--NLSCLFGQAQEPKFAQCIRSTISTLK 935


>Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical
           protein F08B12.1 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -3

Query: 503 YGACQLSPHEQVVNELGRVLAFFSRSIEEXFAKPGRFT-VSIEK*APMAKYWIDAATSSW 327
           +G       +Q+VN + + +      +E         T ++ +  A +  Y ID    +W
Sbjct: 733 FGRAAKEEFQQMVNNIDQYIVHVKSQMESEVTSCQPLTQIARQTTAAVCAYTIDPYNGTW 792

Query: 326 ICFLIML*QVCSMVSHSSLMV 264
           +C LI L  +  +V  S+ ++
Sbjct: 793 MCMLICLVLLIPIVIISNSLI 813


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 733 QEDDWTKNAASENSIFDKKFLGLNRIKIIL 822
           ++DDW K   +E +IF+ KF+ ++   I+L
Sbjct: 46  RDDDWDKVFFNEINIFNPKFIRISLFDIVL 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,589
Number of Sequences: 27780
Number of extensions: 310575
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)