Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0919
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 61 2e-10
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 28 1.9
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 2.5
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 3.3
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 27 4.4
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 5.8
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa... 26 5.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.7
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 7.7
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 7.7
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 61.3 bits (142), Expect = 2e-10
Identities = 43/128 (33%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Frame = +2
Query: 296 LALGSFVEEYNNKVQIISL---DEDTSEFT-AKSTFDHPYPTTKIMWIPDSKGVYPD--L 457
+A+GS EE NN +Q++ L D+ S A++ D YP TK++W P S G D L
Sbjct: 69 IAMGSLNEEPNNMIQLLKLITGDDGNSHLEKAQAATDLEYPVTKLLWNPSSVGSNTDSQL 128
Query: 458 LATSGDYLRIWRAGEPYHYSNVSXIIXRILTSVLLLH--PLIG---TKXIPNLIGTSSID 622
LA++ LR+W+ + + T V + PL K P+ I SS+D
Sbjct: 129 LASTDQQLRLWKTDFEAGIDSPLLCQASLSTHVKTHNNAPLTSFDWCKTDPSYIVVSSLD 188
Query: 623 TTCTIWGL 646
TTCT+W +
Sbjct: 189 TTCTVWDI 196
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = -1
Query: 454 VWIHPLAIRYPHNLGGRVRVIKGTFCSELTCVFIKGNYLYF 332
+W + RY H+L + I G + C + Y YF
Sbjct: 196 IWWSFIMFRYRHDLLQVQKYISGVVALSIVCTMVSTGYFYF 236
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 362 TSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDL--LATSGD-YLRIWRAG 499
TSEF S+ HP + I D KG Y ++ L + GD Y I AG
Sbjct: 403 TSEFCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAAG 451
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 139 ISQNGHQAALLCLI*IYLFKY*TVHELL 56
I QNG + AL CL I+ F+ TV +L+
Sbjct: 1086 IDQNGFEDALRCLYGIHAFRLYTVEKLV 1113
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 563 LHPLIG--TKXIPNLIGTSSIDTTCTIWGLGDWTGLGAGSMKCLG 691
LH + G ++ + T + D CT W D G GA +C+G
Sbjct: 23 LHAMYGPSSEEANQAVLTHAADLGCTFWDSSDMYGFGANE-ECIG 66
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 236 PSAMAINSMNWSVRP 280
PS+ INS NW VRP
Sbjct: 704 PSSKVINSGNWEVRP 718
>SPCC18B5.06 |erf1|sup45|translation release factor
eRF1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 369 SLVSSSREIICTLLLYSSTKLPRANLNLLSGL 274
SLV +EI C + ++SS L+LLSG+
Sbjct: 331 SLVEGVKEINCPVYIFSSLHESGKQLDLLSGI 362
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -1
Query: 781 ANIXRPPPALTER*CRTLPXSMERSTESSRAQTLH*PCPKTCPVSKPP 638
+N PPPA+ R LP +SR T P P + P S PP
Sbjct: 386 SNPPAPPPAIPGRSAPALPP----LGNASRTSTPPVPTPPSLPPSAPP 429
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = -2
Query: 288 LLSGLTDQFIELMAMALGICI--FLY----VSCLNWYS 193
L+SG D ++L ++ C+ F Y VSCL+WYS
Sbjct: 270 LVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCLDWYS 307
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 596 NLIGTSSIDTTCTIWGLGDWTGLGAGSMKCL 688
+L+ T+S DTT +W GD AG+ +CL
Sbjct: 401 SLLLTASSDTTVKLWSRGD-----AGAFECL 426
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,778
Number of Sequences: 5004
Number of extensions: 73002
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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