Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0919
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0044 - 19198001-19199236 112 3e-25
02_05_0322 - 27926619-27927686 66 3e-11
06_01_0187 + 1458802-1458895,1459004-1459464,1459551-1459648,146... 30 2.0
10_07_0062 - 12499872-12501350 30 2.7
10_08_0403 - 17635530-17635578,17635737-17635820,17636110-176362... 29 3.5
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 29 3.5
06_01_0175 - 1371089-1371706,1371812-1371994,1372069-1372324,137... 29 4.7
06_01_0173 - 1364219-1364836,1364941-1365123,1365215-1365470,136... 29 4.7
01_01_1064 + 8393519-8394475 29 4.7
09_02_0244 + 6196651-6196799,6197049-6197106,6197212-6197304 28 8.1
02_05_0523 - 29755007-29755856,29756381-29756940,29757058-297572... 28 8.1
>02_04_0044 - 19198001-19199236
Length = 411
Score = 112 bits (270), Expect = 3e-25
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = +2
Query: 251 INSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMWIP 430
I MNWSVR DK++RLA+ S +E++NN VQ++ LDE + + TFDHPYP TK M++P
Sbjct: 45 IYGMNWSVRRDKKYRLAIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTKTMFVP 104
Query: 431 DSKGVYPDLLATSGDYLRIWRAGEP 505
D V PDLLATS D+LRIWR P
Sbjct: 105 DPHSVRPDLLATSADHLRIWRIPSP 129
Score = 40.3 bits (90), Expect = 0.002
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +1
Query: 520 CVLXNXKNSDFCAPLTSFDWNE 585
C L +NSD+C PLTSFDWN+
Sbjct: 159 CELNGNRNSDYCGPLTSFDWND 180
Score = 35.1 bits (77), Expect = 0.071
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2
Query: 593 PNLIGTSSIDTTCTIW 640
P IGTSSIDTTCTIW
Sbjct: 183 PRRIGTSSIDTTCTIW 198
>02_05_0322 - 27926619-27927686
Length = 355
Score = 66.5 bits (155), Expect = 3e-11
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 16/133 (12%)
Frame = +2
Query: 296 LALGSFVEEYNNKVQIISLDE---DTSEFTAKS--TFDHPYPTTKIMWIPDSKGVYPDLL 460
LA GSF+E+ +N+V ++S D + F A +FDHPYP TK+ + P + P LL
Sbjct: 42 LAAGSFLEDLHNRVSLLSFDPVHPTAASFRALPALSFDHPYPPTKLQFHPRAASA-PHLL 100
Query: 461 ATSGDYLRIWRAGEPYHYSNV--------SXIIXRILTSVLLLHPLIG---TKXIPNLIG 607
A+S D LR+W A + S + R ++ PL + P IG
Sbjct: 101 ASSSDALRLWLAPLDDLAATATAAAPELRSVLDNRKTSASEFCAPLTSFDWNEAEPRRIG 160
Query: 608 TSSIDTTCTIWGL 646
T+SIDTTCTIW +
Sbjct: 161 TASIDTTCTIWDI 173
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/30 (63%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +1
Query: 502 AVPLFECVLXNXKNS--DFCAPLTSFDWNE 585
A P VL N K S +FCAPLTSFDWNE
Sbjct: 124 AAPELRSVLDNRKTSASEFCAPLTSFDWNE 153
>06_01_0187 +
1458802-1458895,1459004-1459464,1459551-1459648,
1460918-1461487,1461534-1461822,1461904-1462086,
1462204-1462824
Length = 771
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 288 LLSGLTDQFIELMAMALGICIFLYVSCLNWYSN 190
LLSG D + MA+ L +C+ L LNW+ N
Sbjct: 713 LLSGALDAGLAFMAVLLYLCLGLEKISLNWWGN 745
>10_07_0062 - 12499872-12501350
Length = 492
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 427 YPHNLGGRVRVIKGTFCSELTCVF 356
YPHN G RV+ G F E CV+
Sbjct: 271 YPHNPSGEYRVLYGEFHGEEECVY 294
>10_08_0403 -
17635530-17635578,17635737-17635820,17636110-17636219,
17637507-17637638,17638497-17638576,17638877-17639008,
17639534-17639648,17640244-17640286,17640359-17640493,
17641347-17641414,17641473-17641478
Length = 317
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 414 RLCGYLIARGCIQTCWQLAVIIY 482
RL YL +RGC +CWQ + Y
Sbjct: 264 RLVAYLSSRGCEYSCWQFVLTGY 286
>05_05_0042 - 21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +2
Query: 341 IISLDEDTSEFTAKSTFDHPYPTTKIMWIPD-SKGVYPDLLATSGDYLRIWRAG--EPY 508
+IS D TSE + PT ++ +P G D L TS + L +W EPY
Sbjct: 1184 VISNDRGTSELEHHRGYHRVRPTVAVLPLPSLLVGYQDDWLKTSANCLSLWEKAPLEPY 1242
>06_01_0175 -
1371089-1371706,1371812-1371994,1372069-1372324,
1372407-1372976,1373423-1373529,1373664-1374136,
1374279-1374372
Length = 766
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 288 LLSGLTDQFIELMAMALGICIFLYVSCLNWYSN 190
LLSG D + MA+ + +C+ L LNW+ N
Sbjct: 709 LLSGALDAGLAFMAVLIYLCLGLEDISLNWWGN 741
>06_01_0173 -
1364219-1364836,1364941-1365123,1365215-1365470,
1365551-1366120,1367066-1367178,1367344-1367816,
1367906-1367984
Length = 763
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 288 LLSGLTDQFIELMAMALGICIFLYVSCLNWYSN 190
LLSG D + MA+ + +C+ L LNW+ N
Sbjct: 706 LLSGALDAGLAFMAVLIYLCLGLENISLNWWGN 738
>01_01_1064 + 8393519-8394475
Length = 318
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 757 ALTER*CRTLPXSMERSTESSRAQTLH*PCPKTCPVSKPP 638
A ER P S+ S+ S + TL PCP CP S P
Sbjct: 227 AAAERSSGFWPPSIWPSSRSKKTATLALPCPCPCPPSLQP 266
>09_02_0244 + 6196651-6196799,6197049-6197106,6197212-6197304
Length = 99
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 266 WSVRPDKRFRLALGSFVEEYNNKVQIIS 349
WS+R FR+A+G F +++ Q IS
Sbjct: 36 WSIRERVNFRIAIGRFGQDWPRVAQFIS 63
>02_05_0523 -
29755007-29755856,29756381-29756940,29757058-29757275,
29757941-29758067
Length = 584
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 291 NLLSGLTDQFIELMAMALGICIFLYVSCLNWY 196
NL SG D+F L+A + + +YV+C WY
Sbjct: 534 NLNSGHLDRFYFLLAALSLVDLAVYVACAVWY 565
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,892,697
Number of Sequences: 37544
Number of extensions: 523797
Number of successful extensions: 1247
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1245
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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