Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0919
         (847 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)                   151   9e-37
SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)                  118   6e-27
SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)                     31   1.2  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26)               29   4.7  
SB_54127| Best HMM Match : Keratin_B2 (HMM E-Value=2.8)                29   6.3  
SB_29808| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)                   29   6.3  
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)                     28   8.3  
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)                28   8.3  

>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
          Length = 609

 Score =  151 bits (365), Expect = 9e-37
 Identities = 66/84 (78%), Positives = 74/84 (88%)
 Frame = +2

Query: 251 INSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMWIP 430
           I  MNWSVR DKRFRLALGSFVEEYNNKVQI+ LDE+T EFT +STFDHPYPTTKI+WIP
Sbjct: 29  IYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGEFTVRSTFDHPYPTTKIIWIP 88

Query: 431 DSKGVYPDLLATSGDYLRIWRAGE 502
           D+   YPDL+ATSGDYLR+WR G+
Sbjct: 89  DNNS-YPDLVATSGDYLRVWRVGD 111



 Score = 35.9 bits (79), Expect = 0.041
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = +3

Query: 753 RAGGGRXMFASVGRRRSVRMF 815
           RAGGGR MFASVG   SVRMF
Sbjct: 130 RAGGGRDMFASVGADGSVRMF 150



 Score = 31.5 bits (68), Expect = 0.89
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 KRKEIYKYQAPWPL 254
           KRKEIYKY+APW +
Sbjct: 16  KRKEIYKYEAPWTI 29


>SB_38782| Best HMM Match : PAN (HMM E-Value=2.3e-05)
          Length = 596

 Score =  118 bits (284), Expect = 6e-27
 Identities = 57/83 (68%), Positives = 64/83 (77%), Gaps = 3/83 (3%)
 Frame = +2

Query: 251 INSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMWIP 430
           I  MNWSVR DKRFRLALGSFVEEYNNKVQI+ LDE+T EFT +STFDHPYPTTKI+WIP
Sbjct: 29  IYGMNWSVRTDKRFRLALGSFVEEYNNKVQIVMLDEETGEFTVRSTFDHPYPTTKIIWIP 88

Query: 431 DSKGVYPDLL---ATSGDYLRIW 490
           D+  V   L+    T GD +  W
Sbjct: 89  DN--VLLSLVMARVTQGDLIGHW 109



 Score = 31.5 bits (68), Expect = 0.89
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 KRKEIYKYQAPWPL 254
           KRKEIYKY+APW +
Sbjct: 16  KRKEIYKYEAPWTI 29


>SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)
          Length = 327

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 458 LATSGDYLRIWRAGEPYHYSNVS 526
           L  +GD + IWR   PYH+ NVS
Sbjct: 248 LELTGDEISIWRDLRPYHFQNVS 270


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = -1

Query: 790 PTEANIXRPPPALTER*CRTLPXSMERSTESSRAQTLH*PCPKTCPVSKPPDGAGRVNTT 611
           PT + + +P PA T    +  P +   +T +  A T   P PKT P    P       TT
Sbjct: 86  PTTSTLTKPTPATTPTPTKPTPTAHTPTTPTPTAHTPTKPTPKT-PTPTTPTPTAHTPTT 144


>SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26)
          Length = 184

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 288 LLSGLTDQFIELMAMALGICIFLYVSCLNWYSNCCVASTSLIMFNVSLP 142
           LL+GL  ++    +  + I    + +C  W  NCCV S S+   NV LP
Sbjct: 36  LLAGLLSRWSITSSFWIYIHSKQFRTCKTWEHNCCVRSNSIP--NVDLP 82


>SB_54127| Best HMM Match : Keratin_B2 (HMM E-Value=2.8)
          Length = 289

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 20/94 (21%), Positives = 39/94 (41%)
 Frame = +2

Query: 200 QFRHET*RNIQIPSAMAINSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTA 379
           Q RHET    Q+PS + I + +     +KRF  A+ S +    +    + +    ++ T 
Sbjct: 47  QIRHET--KYQVPSQVQIKTGDEKEAYEKRFDDAMDSLLGNITSSCSTLGIPVSPNDSTC 104

Query: 380 KSTFDHPYPTTKIMWIPDSKGVYPDLLATSGDYL 481
           + + D     T      D   +  ++ AT  + +
Sbjct: 105 RQSTDTSISITTSSQAQDDITIVAEVQATQPEVI 138


>SB_29808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 584 SFQSKDVRGAQKSEFLXLXRTHSNNGTALRHAICVDNHR*LPTSLDT 444
           S Q K ++G  + E L L R   +  ++ RH +C+  +   P+  D+
Sbjct: 446 SLQGKLIQGVVQVEVLSLYRGEVSRQSSRRHQVCIKAYHGTPSHADS 492


>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
          Length = 454

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 492 RHMRR*SPLVANKSGYTPL 436
           +H  R  P +ANK+GYTPL
Sbjct: 280 KHKTRADPHIANKAGYTPL 298


>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
          Length = 727

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 452 DLLATSGDYLRIWRAGEPYHYSNVSXIIXRILTSVLLLHPLIG 580
           DL  TSG  +R WR      YS ++ +I R+   V   H  +G
Sbjct: 135 DLPRTSGSVIRFWRLAPSIVYSRLT-VINRLCDYVTSPHSAVG 176


>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
          Length = 919

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -1

Query: 739 CRTLPXSMERSTESSRAQTLH*PCPKTCPVSKPPDGAGRVNTTGANEVRNALRSNQRM 566
           CRT   + E+ T    ++ L  PCP +    +P  G     ++   E+      N+++
Sbjct: 128 CRTKANAAEQPTAPEESELLEPPCPPSTQSEEPAVGTSSQCSSPEEEISRLCIDNKKL 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,810,720
Number of Sequences: 59808
Number of extensions: 584647
Number of successful extensions: 1406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)