Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0919
(847 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 117 9e-27
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 116 3e-26
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 93 2e-19
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 93 2e-19
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 93 2e-19
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 38 0.011
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family... 31 0.73
At1g32450.1 68414.m04005 proton-dependent oligopeptide transport... 30 1.7
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64... 30 2.2
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 117 bits (282), Expect = 9e-27
Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 4/136 (2%)
Frame = +2
Query: 251 INSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKS--TFDHPYPTTKIMW 424
I +MNWSVR DK++RLA+ S +E+Y N+V+I+ LDE E + +F+HPYP TK ++
Sbjct: 30 IYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEHPYPPTKTIF 89
Query: 425 IPDSKGVYPDLLATSGDYLRIWRAGEPYHYSNVSXIIXRILTSVLL--LHPLIGTKXIPN 598
IPD + PDLLATS D+LR+WR + + + + S L + P
Sbjct: 90 IPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPR 149
Query: 599 LIGTSSIDTTCTIWGL 646
IGTSS DTTCTIW +
Sbjct: 150 RIGTSSTDTTCTIWDI 165
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 116 bits (278), Expect = 3e-26
Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Frame = +2
Query: 251 INSMNWSVRPDKRFRLALGSFVEEYNNKVQIISLDEDTSEFTAKST--FDHPYPTTKIMW 424
I +MNWS+R DK++RLA+ S +E+Y N+V+I+ LDE E + F+HPYP TK +
Sbjct: 30 IYAMNWSIRRDKKYRLAITSLIEQYPNRVEIVQLDESNGEIRSDPNLCFEHPYPPTKTSF 89
Query: 425 IPDSKGVYPDLLATSGDYLRIWRAGEPYHYSNVSXIIXRILTSVLL--LHPLIGTKXIPN 598
IPD + PDLLATS D+LR+WR + + + S + + P
Sbjct: 90 IPDKECQRPDLLATSSDFLRLWRISDDESRVELKSCLSSDKNSEFSGPITSFDWNEAEPR 149
Query: 599 LIGTSSIDTTCTIWGL 646
IGTSSIDTTCTIW +
Sbjct: 150 RIGTSSIDTTCTIWDI 165
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 93.1 bits (221), Expect = 2e-19
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Frame = +2
Query: 269 SVRPDKRFRLALGSFVEEYNNKVQIISLDED--TSEFTAKSTFDHPYPTTKIMWIPDS-- 436
S+R R+A+GSF+E+YNN++ I+S D D T + +F+HPYP TK+M+ P S
Sbjct: 31 SLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLR 90
Query: 437 KGVYPDLLATSGDYLRIWRAGEPYHYSNVSXIIXRILTSVLL--LHPLIGTKXIPNLIGT 610
+ DLLA+SGD+LR+W E ++ TS L P +GT
Sbjct: 91 RPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGT 150
Query: 611 SSIDTTCTIWGL 646
SIDTTCTIW +
Sbjct: 151 CSIDTTCTIWDI 162
Score = 41.5 bits (93), Expect = 7e-04
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 VLXNXKNSDFCAPLTSFDWNE 585
VL N K S+FCAPLTSFDWN+
Sbjct: 122 VLNNSKTSEFCAPLTSFDWND 142
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 93.1 bits (221), Expect = 2e-19
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Frame = +2
Query: 269 SVRPDKRFRLALGSFVEEYNNKVQIISLDED--TSEFTAKSTFDHPYPTTKIMWIPDS-- 436
S+R R+A+GSF+E+YNN++ I+S D D T + +F+HPYP TK+M+ P S
Sbjct: 31 SLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLR 90
Query: 437 KGVYPDLLATSGDYLRIWRAGEPYHYSNVSXIIXRILTSVLL--LHPLIGTKXIPNLIGT 610
+ DLLA+SGD+LR+W E ++ TS L P +GT
Sbjct: 91 RPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGT 150
Query: 611 SSIDTTCTIWGL 646
SIDTTCTIW +
Sbjct: 151 CSIDTTCTIWDI 162
Score = 41.5 bits (93), Expect = 7e-04
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 VLXNXKNSDFCAPLTSFDWNE 585
VL N K S+FCAPLTSFDWN+
Sbjct: 122 VLNNSKTSEFCAPLTSFDWND 142
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 93.1 bits (221), Expect = 2e-19
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Frame = +2
Query: 269 SVRPDKRFRLALGSFVEEYNNKVQIISLDED--TSEFTAKSTFDHPYPTTKIMWIPDS-- 436
S+R R+A+GSF+E+YNN++ I+S D D T + +F+HPYP TK+M+ P S
Sbjct: 31 SLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPTKLMFSPPSLR 90
Query: 437 KGVYPDLLATSGDYLRIWRAGEPYHYSNVSXIIXRILTSVLL--LHPLIGTKXIPNLIGT 610
+ DLLA+SGD+LR+W E ++ TS L P +GT
Sbjct: 91 RPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGT 150
Query: 611 SSIDTTCTIWGL 646
SIDTTCTIW +
Sbjct: 151 CSIDTTCTIWDI 162
Score = 41.5 bits (93), Expect = 7e-04
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 523 VLXNXKNSDFCAPLTSFDWNE 585
VL N K S+FCAPLTSFDWN+
Sbjct: 122 VLNNSKTSEFCAPLTSFDWND 142
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 305 GSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDLLATSGDY-L 481
G+ + N+V ++ L SE + F HP + P + ++ + +T Y
Sbjct: 34 GTLSLKEENEVHLLRLSSGGSELLCEGLFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGA 93
Query: 482 RIWRAGEPYHYSNVSXI 532
IW+ EPY SN S +
Sbjct: 94 AIWQIPEPYGQSNSSTL 110
>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
protein
Length = 883
Score = 31.5 bits (68), Expect = 0.73
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = +2
Query: 287 RFRLALGSFVEEYNNKVQIISLDEDTSEFTAKSTFDHPYPTTKIMWIPDSKGVYPDLLAT 466
R +L GSFV+E+N+ S E++ D P T D GV P T
Sbjct: 465 RCQLTFGSFVQEFNSSRNSESAFEESHSSEEVRESDRSSPVTCPEASADGPGVLP---IT 521
Query: 467 SGDYLRIWRAGEP 505
D++R+ R+ P
Sbjct: 522 IDDHVRVSRSDSP 534
>At1g32450.1 68414.m04005 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 614
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 291 NLLSGLTDQFIELMAMALGICIFLYVSCLNWY 196
NL G D+F L+A I + +Y++C WY
Sbjct: 550 NLNKGHLDRFYFLLAALTSIDLVVYIACAKWY 581
>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
Lysosomal acid lipase/cholesteryl ester hydrolase
precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
Pfam profile PF04083: ab-hydrolase associated lipase
region
Length = 418
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -2
Query: 336 TLLLYSSTKLPRANLNLLSGLTDQFIELMAMALGICIFLYVSCLNWYSNCCVASTSLIMF 157
T L +++ L N SGL FI+ + + GI + VS + NCC+ ++++ +F
Sbjct: 235 TFLAEATSILGWPEFNPKSGLVGDFIKAICLKAGIDCYDLVSVITG-KNCCLNASTIDLF 293
Query: 156 NVSLP 142
+ P
Sbjct: 294 LANEP 298
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,525,220
Number of Sequences: 28952
Number of extensions: 398314
Number of successful extensions: 1069
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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