Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0918
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)             46   3e-05
SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  

>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
          Length = 101

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = +1

Query: 280 LFISSVAAQKAASNGFEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRL 453
           L + + A   AA   FE+  Y   A  EE R+PR+VR+G +Q+ I   T+ PI +Q L
Sbjct: 36  LSLPAAAVSVAAELDFELAGYKIDAAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQVL 93


>SB_56373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 301 AQKAASNGFEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFE 465
           A+    N F +  Y   A ++EC K  +  L     SIAI+  N +T + LA  E
Sbjct: 246 AELEKKNSFTLLHYAAQAGQQECLKYLLTALRGANRSIAITDSNGVTPEHLAARE 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,587,252
Number of Sequences: 59808
Number of extensions: 446547
Number of successful extensions: 668
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)