Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0918
         (855 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    26   1.3  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   6.8  

>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 644 YFTASSAKKTVLGPVNTXSXKSHHGCFSL 558
           Y+  + AK  +LGP  + S     GC S+
Sbjct: 249 YYLPTQAKPEILGPATSMSAALRFGCLSV 277


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
 Frame = +1

Query: 262 RIDQCALFISSVAAQKAASNGFEIKAYDFPARKEE------CRKPRIVRLGLIQHSIAIS 423
           + DQCA         K   N +    Y  P  K +      C++P   +  LI+H     
Sbjct: 384 KCDQCAQTFRQKQLLKRHMNYYHNPDYVAPTPKAKTHICPTCKRPFRHKGNLIRHMAMHD 443

Query: 424 TDNPITQQRLAIFEKVQKIISAAAAEQV 507
            ++ ++++  A+ E  QK +     E++
Sbjct: 444 PESTVSKEMEALREGRQKKVQITFEEEI 471


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,595
Number of Sequences: 2352
Number of extensions: 14856
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90959220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)