Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0918
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64370.1 68418.m08086 beta-ureidopropionase, putative / beta-...   127   8e-30
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    29   3.9  
At1g48540.2 68414.m05428 leucine-rich repeat family protein            29   5.2  
At1g48540.1 68414.m05427 leucine-rich repeat family protein            29   5.2  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    29   5.2  

>At5g64370.1 68418.m08086 beta-ureidopropionase, putative /
           beta-alanine synthase, putative similar to beta-alanine
           synthase [Dictyostelium discoideum] GI:14334061;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 408

 Score =  127 bits (307), Expect = 8e-30
 Identities = 71/149 (47%), Positives = 96/149 (64%)
 Frame = +1

Query: 310 AASNGFEIKAYDFPARKEECRKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISA 489
           ++ + F+++A  F A KE+ R PR+VR+GLIQ+SIA+ T  P + Q   IF+K++ II A
Sbjct: 65  SSKHDFDLQAASFSADKEQMRNPRVVRVGLIQNSIALPTTAPFSDQTRGIFDKLKPIIDA 124

Query: 490 AAAEQVIFFVYKKLGTCPLAFCTREKQPWCDFXEXVLTGPSTVFLAELAVKYDMGIISPI 669
           A    V     ++  T P AFCTRE++ WC+F E V  G ST FL ELA KY+M I+SPI
Sbjct: 125 AGVAGVNILCLQEAWTMPFAFCTRERR-WCEFAEPV-DGESTKFLQELAKKYNMVIVSPI 182

Query: 670 LXRDDIPXGY*FXNTAVVIHGILGKVLGK 756
           L R DI  G    NTAV+I G  G ++GK
Sbjct: 183 LER-DIDHGEVLWNTAVII-GNNGNIIGK 209


>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
           helicase, putative 
          Length = 2172

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = +1

Query: 370 RKPRIVRLGLIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVIFFVYKKLGTCPLA 549
           R  R V LG  Q  I I+   P+ + +L      QK+++ A   QV+ FV+ +  T   A
Sbjct: 703 RSYRPVPLG--QQYIGINVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTA 760

Query: 550 FCTRE 564
              R+
Sbjct: 761 RAIRD 765


>At1g48540.2 68414.m05428 leucine-rich repeat family protein 
          Length = 1051

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 157 NLQRNGFCRTHKFG*SNIKFIKG*RTRRV 243
           NL+ NG C  HK G   +K+++G  T+++
Sbjct: 490 NLECNGSCVDHKAGMDYMKYVEGNETQKI 518


>At1g48540.1 68414.m05427 leucine-rich repeat family protein 
          Length = 1063

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 157 NLQRNGFCRTHKFG*SNIKFIKG*RTRRV 243
           NL+ NG C  HK G   +K+++G  T+++
Sbjct: 490 NLECNGSCVDHKAGMDYMKYVEGNETQKI 518


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
           helicase, putative similar to SP|O75643 U5 small nuclear
           ribonucleoprotein 200 kDa helicase {Homo sapiens};
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF02889:
           Sec63 domain
          Length = 2171

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 397 LIQHSIAISTDNPITQQRLAIFEKVQKIISAAAAEQVIFFVYKKLGTCPLAFCTRE 564
           L Q  I IS   P+ + +L      QK+++ A   QV+ FV+ +  T   A   R+
Sbjct: 709 LHQQYIGISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRD 764


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,818,466
Number of Sequences: 28952
Number of extensions: 321400
Number of successful extensions: 566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)