Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0917
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    83   5e-17

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 83.0 bits (196), Expect = 5e-17
 Identities = 37/64 (57%), Positives = 45/64 (70%)
 Frame = +1

Query: 514 QLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 693
           Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFG
Sbjct: 187 QMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFG 246

Query: 694 HPEV 705
           HPEV
Sbjct: 247 HPEV 250



 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 29/63 (46%), Positives = 35/63 (55%)
 Frame = +2

Query: 257 FPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLA 436
           +PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L 
Sbjct: 101 YPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLT 160

Query: 437 GIS 445
           GIS
Sbjct: 161 GIS 163



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 9   NHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXX 182
           N KDI  LY                    EL  PGS  L G+ Q+YN  ++AH       
Sbjct: 16  NAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFF 75

Query: 183 XXXXXXXXXXXN*LVPLILGAPDI 254
                      N LVPL++GAPD+
Sbjct: 76  FIIPALFGAFGNYLVPLMIGAPDV 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,617
Number of Sequences: 5004
Number of extensions: 45893
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)