Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0916
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.3  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   1.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   1.7  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 346 YANVCNTTMKNSTPQ 302
           + NV NTT++N TPQ
Sbjct: 450 FHNVTNTTLQNLTPQ 464


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 432 QLGPPPTPAVSLRSMPNCGEGTVRP 358
           QL P PT + S  S P  G G + P
Sbjct: 84  QLMPSPTVSGSEMSSPGAGSGNLSP 108


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 432 QLGPPPTPAVSLRSMPNCGEGTVRP 358
           QL P PT + S  S P  G G + P
Sbjct: 84  QLMPSPTVSGSEMSSPGAGSGNLSP 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,244
Number of Sequences: 336
Number of extensions: 4789
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)