Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0916
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 58 1e-09
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.087
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 30 0.46
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 29 0.81
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 29 0.81
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 29 1.1
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 27 4.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 4.3
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.7
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 5.7
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 5.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 7.5
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 7.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 10.0
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 25 10.0
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 10.0
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 58.4 bits (135), Expect = 1e-09
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = +3
Query: 255 LGGCVMVLGRLKVDIACGVLFFIVVLQTFAYSILWDVQFLLRNXXXXXXXXXXXXEARAE 434
L G +V+ + + A G L F+ +LQ FAY ++ + RN +
Sbjct: 107 LVGSTLVVFKKRQAYAIGSLLFVTLLQAFAYGLITSGEMFFRNMSVIGGLCLVASDTFIH 166
Query: 435 GR-SLFAGVPSLGENKPKTYLATRRSILLAFMFITLLRFE---ISFLQIIQDLLGSILMI 602
R + FAG+P++ E+ +TY +LL FMF+ LL E IS+ +I+ +L
Sbjct: 167 RRINRFAGLPAVSEHNKRTYFQLAGRVLLIFMFLGLLAKEGSGISWTRILVHILSVTACA 226
Query: 603 LVTVGYR 623
+V +G++
Sbjct: 227 MVVIGFK 233
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 97 LPTVARLCLISTFLXDGLRMWFQWSEQ----RDYMDMSWGCGKFLATMFVIVNLFG 252
+P + R +++T+ D +R+ QW EQ RDY +G L + V++ L G
Sbjct: 54 MPLLGRFLIVATYFEDAIRIVTQWPEQVSYMRDYRRFRFGTAPLLLFVCVVLMLVG 109
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.087
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = -1
Query: 412 TSS*PPLNAKLRRRNCT-SHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPNDQINLL 236
+SS P + + NCT S S+LY + T+ +T ++ S+P T T + +
Sbjct: 517 SSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTIS 576
Query: 235 SQTLWRGICRSPRTCPCSLSALTTGT 158
S T + C S S L T T
Sbjct: 577 SSTPVTSTPVTTTNCTTSTSVLYTST 602
Score = 26.6 bits (56), Expect = 4.3
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -1
Query: 496 AKYVFGLFSPSDGTPANRLRPSARASANTSS*PPLNAKLRRRNC-TSHSILYANVCNTTM 320
+ Y +P TP + S +S P + L NC TS S+ Y + T+
Sbjct: 512 SNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSS 571
Query: 319 KNSTPQAISTLSLPSTITH 263
+ + S P T T+
Sbjct: 572 NYTISSSTPVTSTPVTTTN 590
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 29.9 bits (64), Expect = 0.46
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 25 QIPNEYVSTAEDVADQVIRKGKNVLPTVARLCLISTFLXDGLRMWFQ 165
QIP STA+ A+ + ++ + LP V C TF D L +FQ
Sbjct: 41 QIPQIEGSTAKRDAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQ 87
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 29.1 bits (62), Expect = 0.81
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 328 TTMKNSTPQAISTLSLPST-ITHPPNDQINLLSQTLWRGICRSPRT 194
T STPQ +T S P+T THPP Q + +R I SP+T
Sbjct: 279 TPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISD---FRSIPSSPKT 321
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 29.1 bits (62), Expect = 0.81
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -1
Query: 235 SQTLWRGICRSPRTCPCSLS 176
++TLW ICR RTCP SLS
Sbjct: 352 ARTLW-AICRHLRTCPLSLS 370
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -1
Query: 328 TTMKNSTPQAISTLSLPSTITHPPNDQINLLSQTLWRGICRSPRTCPCSLSALTTGTTCG 149
T++ S+P S PST+ P Q +L S L + SPR S S++TT T
Sbjct: 186 TSLAQSSPNLASLSKQPSTVHAPSTRQRDLKSSIL--SLYASPRP-QVSSSSITTNATYQ 242
Query: 148 DRP 140
+ P
Sbjct: 243 NLP 245
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 376 RRNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPND 251
R +C H + C+ K +S+++LPS + +PP D
Sbjct: 116 RNDCIFHDA--SGACHFFFKEVGNWTVSSIALPSNLANPPID 155
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -1
Query: 364 TSHSILYANVCNTTMKNSTPQAISTLSL-PSTITHPPNDQIN 242
TSH+ V TT N+T T SL +T T PP +N
Sbjct: 75 TSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVN 116
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +1
Query: 130 TFLXDGLRMWFQWSEQRDYMDM 195
T DGLR+W W +D D+
Sbjct: 181 TIRKDGLRLWGSWKRGKDESDL 202
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 355 SILYANVCNTTMKNSTPQAISTLSLPSTITH 263
+I +N NTT ST Q S+ +PS + H
Sbjct: 48 AIPQSNALNTTPNESTSQIDSSPKIPSAVPH 78
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 691 WAVPSLQTASETSSNNDFFPDIVSIGXLLMIVYLGAGRR 807
W+ Q A E N F P V+ G +Y+G GR+
Sbjct: 336 WSAYIRQCAREIGKENFFIPGEVTSGADFGSIYVGRGRQ 374
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = -1
Query: 373 RNCTSHSILYANVCNTTMKNSTPQAISTLSLPSTITHPPNDQINLLSQTLWRGI-----C 209
R+ TS ++ Y V TT + +A P + + + ++ S T + C
Sbjct: 205 RSVTSDTVHYKRVEGTTHYDGIDKADMKKFFPGDLLYSGENDVHFPSLTTAETLDFAAKC 264
Query: 208 RSPRTCPCSLS 176
R+P PC+L+
Sbjct: 265 RTPNNRPCNLT 275
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 507 TGELPSTSSVCSLRATARPRTDCALQLGPPPTPAVSLRSMPNCGEG 370
+ LP+ + + +A P+ + A L PP P+V S N +G
Sbjct: 129 SNHLPAFQQIPPIHQSAYPQNNVAEVLMPPIPPSVEASSGQNFNQG 174
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 423 PPPTPAVSLRSMPNCGE 373
PPP PA S S+PN G+
Sbjct: 1732 PPPLPASSAPSVPNPGD 1748
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 331 NTTMKNSTPQAISTLSLP 278
NTTMK+S QA++ ++LP
Sbjct: 226 NTTMKSSLNQALTLINLP 243
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 25.4 bits (53), Expect = 10.0
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 136 LXDGLRMWFQW 168
L DG+R+WF+W
Sbjct: 601 LTDGMRVWFEW 611
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,461
Number of Sequences: 5004
Number of extensions: 71874
Number of successful extensions: 230
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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