Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0916
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 33 0.37
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 31 1.1
07_03_0072 - 13051145-13052362 30 2.0
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 30 2.0
04_04_0734 + 27648661-27649596 29 3.4
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835 29 3.4
08_01_0437 + 3850137-3850581,3851134-3851159 29 6.0
03_03_0188 + 15269347-15270213 29 6.0
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 28 7.9
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198... 28 7.9
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 32.7 bits (71), Expect = 0.37
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 314 VLHSCITDIRVQYTMGRTVPSPQFGIERRLTAGVGGGPS*RAQSVRGRAVARREQTEDV 490
VL + D+R YT GR + QFG+ L G +S+ R +A R+ EDV
Sbjct: 54 VLGRPMEDVRATYTFGRELGRGQFGV-TYLVTHKATGKRFACKSIATRKLAHRDDIEDV 111
>02_05_1134 -
34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 697 VPSLQTASETSSNNDFFPDIVSIGXL 774
VP++ TAS T++ NDF D++ IG +
Sbjct: 654 VPAITTASTTTAPNDFLQDLLGIGGI 679
>07_03_0072 - 13051145-13052362
Length = 405
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 120 PYIHIPXGRSPHVVPVVRAE-RLHGHVLGL 206
P IP GR P V+P++ AE RL G VLG+
Sbjct: 83 PKAAIPRGRLPGVMPLISAETRLGGVVLGM 112
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 314 VLHSCITDIRVQYTMGRTVPSPQFGIERRLTAGVGGGPS*RAQSVRGRAVARREQTEDV 490
VL + D+R YT GR + QFG+ L G +S+ R +AR + +DV
Sbjct: 78 VLGRPMEDVRATYTFGRELGRGQFGV-TYLATHKPTGRRYACKSIAARKLARPDDLDDV 135
>04_04_0734 + 27648661-27649596
Length = 311
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 441 CALQLGPPPTPAVSLRSMPNCGEG 370
CA PPP+PA L+ +P C G
Sbjct: 205 CAPPPNPPPSPATPLQPLPECDGG 228
>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
Length = 379
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 178 RDYMDMSWGCGKFLATMFVI-VNLFGH*EDVLWC*EGSKWISLAA 309
+DY++M WG KF T+ + N DV+W + + IS+ A
Sbjct: 192 KDYLEMMWGRNKFQQTILELGYNFLFTDVDVMWFRDPFRHISMGA 236
>08_01_0437 + 3850137-3850581,3851134-3851159
Length = 156
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 405 VSLRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRKRYP 292
V LRS P CG R +V+C +Q ARR+R P
Sbjct: 12 VQLRSHP-CGPPMGRTMVWCLHQDSVQRCAHARRRRRP 48
>03_03_0188 + 15269347-15270213
Length = 288
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = -1
Query: 454 PANRLRPSARASANTSS*PPLNAKLRRRNCTSHSILYANVCNTTMKNSTPQAISTLSLPS 275
P LRPS ++ PP L + CT+ S L TT +S A++ + +
Sbjct: 149 PPFLLRPSPLKYTHSHPTPPPPPPLHHQACTTTSFLGNAAAATTSTSSLVDALALFAKSN 208
Query: 274 TITHPP 257
+ PP
Sbjct: 209 VMVAPP 214
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = -1
Query: 547 NLKSVMNMKASRMDRRVAKYVFGLFSPSDGTPANRLRPSARASANTSS*PPL 392
NLKS + + ++ + +++ + SP D A +RP + ++T + P+
Sbjct: 799 NLKSALRNQGTQTTQEISETALVVNSPDDAPRAENIRPFGGSGSSTETQSPM 850
>01_06_1074 +
34318685-34319314,34319429-34319546,34319662-34319814,
34319906-34320021,34320135-34320302,34320424-34320551,
34320645-34320744,34320866-34320958
Length = 501
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 314 VLHSCITDIRVQYTMGRTVPSPQFGIERRLTAGVGGGPS*RAQSVRGRAVARREQTEDV 490
VL + D+R YT+G+ + QFG+ L G +++ R ++ +E EDV
Sbjct: 49 VLGRPMEDVRSIYTIGKELGRGQFGV-TSLCTHKATGQKFACKTIAKRKLSTKEDVEDV 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,043,653
Number of Sequences: 37544
Number of extensions: 546058
Number of successful extensions: 1850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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