Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0915
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 144 2e-35
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 86 5e-18
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 76 7e-15
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 75 1e-14
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 74 3e-14
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 71 2e-13
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 57 4e-09
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 50 5e-07
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 38 0.002
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 37 0.003
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 35 0.012
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 32 0.12
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 31 0.20
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 31 0.27
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 29 0.62
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 4.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 7.6
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 7.6
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 144 bits (348), Expect = 2e-35
Identities = 72/109 (66%), Positives = 76/109 (69%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
VG DRNKY I +PLPPKIDP+VTMMQVEEKPDVTY DVGGCKEQIE+LREVVE PLL PE
Sbjct: 144 VGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPE 203
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
+FVKLGI TGKT FIRVIGSELV K
Sbjct: 204 RFVKLGIDPPKGIMLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 252
Score = 95.9 bits (228), Expect = 6e-21
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Frame = +2
Query: 254 AVMKRVNELTGIKESDTGXXXXXXXXXXXXKQTLQNEQPLQVARCTKIINADSNDPK--Y 427
AV+KR+N+ GIKESDTG +Q + EQPLQVARCTKII + + K Y
Sbjct: 56 AVLKRINDTVGIKESDTGLAPISFWDVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAY 115
Query: 428 IINVKQFAKFVVDLQDSVAPTDIEEGM 508
+IN+KQ AKFVV L + V+PTDIEEGM
Sbjct: 116 VINLKQIAKFVVSLGERVSPTDIEEGM 142
Score = 33.5 bits (73), Expect = 0.038
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +3
Query: 168 LDEGDIALLKSYGQGQYTKIIKEVEE 245
LDEGDI LLKSY G Y + + ++E
Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKE 52
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 86.2 bits (204), Expect = 5e-18
Identities = 49/110 (44%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V + + YQ+ LP K+DP V++M VE+ PD TY VGG ++QI++++EV+E P+ HPE
Sbjct: 110 VALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPE 169
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPA-FIRVIGSELVPK 837
F LGI TGKT +LA + T FIRV GSELV K
Sbjct: 170 LFESLGIPQPKGILLYGPPGTGKT-LLARAVAHHTDCKFIRVSGSELVQK 218
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 75.8 bits (178), Expect = 7e-15
Identities = 38/109 (34%), Positives = 61/109 (55%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V + R+ + LPP+ D +++M++ +E+PDV+Y+DVGG Q +++RE VE PL +
Sbjct: 99 VALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGD 158
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
+ ++GI TGKT ++ FIRV+GSE V K
Sbjct: 159 LYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTAANFIRVVGSEFVQK 207
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 74.9 bits (176), Expect = 1e-14
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Frame = +1
Query: 565 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXX 744
DP + +M++++ P +Y+D+GG + QI++++E VE PL HPE + ++GI
Sbjct: 174 DPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGA 233
Query: 745 XXTGKTCVLAPSPTGXTPA-FIRVIGSELVPK 837
TGKT +LA + T A F+RV+GSEL+ K
Sbjct: 234 PGTGKT-LLAKAVANQTSATFLRVVGSELIQK 264
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 73.7 bits (173), Expect = 3e-14
Identities = 38/109 (34%), Positives = 58/109 (53%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V +D I LP ++DP V M +E+ D++++ VGG EQI +LREV+E PL +PE
Sbjct: 97 VSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPE 156
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
F+++GI TGKT + F++V+ S +V K
Sbjct: 157 LFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDK 205
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/107 (33%), Positives = 55/107 (51%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
+GV+++ Y I LP + D V M+V+EKP YSD+GG +QIE+L E + P+ +
Sbjct: 150 IGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQAD 209
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELV 831
KF KLG+ TGKT + F+++ +LV
Sbjct: 210 KFRKLGVKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLV 256
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 56.8 bits (131), Expect = 4e-09
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 604 DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPSP 783
+V Y D+GGC+ Q+ ++RE+VE PL HP+ F +GI TGKT ++A +
Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKT-LMARAV 278
Query: 784 TGXTPAFIRVI-GSELVPK 837
T AF +I G E++ K
Sbjct: 279 ANETGAFFFLINGPEIMSK 297
Score = 54.0 bits (124), Expect = 3e-08
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +1
Query: 565 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXX 744
+P+ V E P+V + D+GG +E +LRE V+ P+++ EKF++ G+
Sbjct: 480 NPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGP 539
Query: 745 XXTGKTCVLAPSPTGXTPAFIRVIGSELV 831
TGKT + + FI V G EL+
Sbjct: 540 PGTGKTLLAKAIANECSANFISVKGPELL 568
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 49.6 bits (113), Expect = 5e-07
Identities = 30/81 (37%), Positives = 38/81 (46%)
Frame = +1
Query: 595 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLA 774
E P+V +SD+GG +E +KL+E VE PL H E F +LG+ KT
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTITAK 600
Query: 775 PSPTGXTPAFIRVIGSELVPK 837
T FI V G EL K
Sbjct: 601 AIATETGLNFIAVKGPELFDK 621
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPT 786
VT+S +GG + QI ++R++VE P +PE F I TGKT V+
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335
Query: 787 GXTPAFIRVIGSELVPK 837
+ G +V K
Sbjct: 336 EANAQVFTIDGPSVVGK 352
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 592 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKT 762
E D++ SD+GG + I +L E+V P+ HPE + GI GKT
Sbjct: 166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKT 222
Score = 33.5 bits (73), Expect = 0.038
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 559 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXX 738
K+ P+ P V+++++G K +L+ + P+ PE + +GI
Sbjct: 473 KVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLW 532
Query: 739 XXXXTGKTCVLAPSPTGXTPA-FIRVIGSELVPK 837
GKT +LA + + A FI + G EL+ K
Sbjct: 533 GPPGCGKT-LLAKAVANESKANFISIRGPELLNK 565
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +1
Query: 598 KPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKT 762
+ ++ ++ +GG ++ I +L+E+V PLL+PE F+ L I TGKT
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKT 420
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKT 762
+++ VGG I +L+E+V PLL+PE F + + TGKT
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKT 314
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.9 bits (69), Expect = 0.12
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 604 DVTYSDVGGCKEQIEKLREVVETPLLHPEKF 696
DV++ D+GG E + +L + V PL +PE F
Sbjct: 85 DVSFDDIGGMDEHVNQLLQDVLFPLKYPEVF 115
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.1 bits (67), Expect = 0.20
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = +1
Query: 580 MMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGK 759
M E + ++DV G E E++ E V+ L +P+ + +LG TGK
Sbjct: 284 MFNHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAILSGPPGTGK 342
Query: 760 TCVLAPSPTGXTPAFIRVIGSELV 831
T + + F+ V GSE +
Sbjct: 343 TLLAKATAGEANVPFLSVSGSEFL 366
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 30.7 bits (66), Expect = 0.27
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 571 TVTMMQVEEKP-DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXX 747
T +EE+ +V +SDV G E E+L E+V+ L P F +LG
Sbjct: 251 TTEQEPMEERAINVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLPRGVLLTGPP 309
Query: 748 XTGKTCVLAPSPTG 789
TGKT +LA + G
Sbjct: 310 GTGKT-MLARAVAG 322
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 29.5 bits (63), Expect = 0.62
Identities = 22/77 (28%), Positives = 28/77 (36%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPT 786
V +SD+ G + L+E V P L PE F L TGKT + T
Sbjct: 376 VYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLR-EPVQGMLLFGPPGTGKTMLARAVAT 434
Query: 787 GXTPAFIRVIGSELVPK 837
F + S L K
Sbjct: 435 EAKATFFSISASSLTSK 451
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 4.4
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 517 VDRNKYQIHIPLPPK-IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEK 693
VD +++ + L K I TV ++ K V++SDV + + E R+ ++ P+ P+K
Sbjct: 128 VDESRFILDHDLSTKYIQKTVGLIIASVKRKVSFSDVEEDEFEPENTRKKLQKPIEKPKK 187
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -3
Query: 704 SFTNFSGCN--SGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 588
+FT+ SG N SG+ T+S S + S PTS + +SGF++T
Sbjct: 619 TFTS-SGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 659
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -3
Query: 704 SFTNFSGCN--SGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 588
+FT+ SG N SG+ T+S S + S PTS + +SGF++T
Sbjct: 681 TFTS-SGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 721
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 568 PTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLG 708
P+++ + + + +V+ + E IEKLR+ ++T KF+ LG
Sbjct: 132 PSLSALATQAQRNVSKTLPQSTNETIEKLRQFLQTRYQPATKFLDLG 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,374
Number of Sequences: 5004
Number of extensions: 60123
Number of successful extensions: 211
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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