Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0915
(838 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 153 1e-37
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 145 4e-35
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 91 1e-18
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 91 1e-18
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 86 3e-17
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 79 5e-15
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 79 5e-15
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 76 3e-14
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 76 3e-14
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 69 4e-12
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 69 4e-12
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 53 2e-07
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 52 6e-07
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 52 6e-07
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 47 1e-05
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 44 1e-04
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 42 4e-04
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 41 0.001
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 40 0.002
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 39 0.004
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 39 0.005
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 39 0.005
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 38 0.008
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 38 0.011
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 37 0.019
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 34 0.10
At1g53790.1 68414.m06122 F-box family protein contains Pfam PF00... 34 0.10
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 33 0.18
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 33 0.18
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 33 0.23
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 33 0.31
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 32 0.41
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 32 0.41
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 31 0.95
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 30 1.7
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 30 1.7
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 30 2.2
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 29 3.8
At1g43000.1 68414.m04950 zinc-binding family protein similar to ... 28 6.7
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 28 8.8
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 28 8.8
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71... 28 8.8
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 153 bits (371), Expect = 1e-37
Identities = 79/110 (71%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
VGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+DVGGCKEQIEK+REVVE P+LHPE
Sbjct: 133 VGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPE 192
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPA-FIRVIGSELVPK 837
KFVKLGI TGKT +LA + T A FIRVIGSELV K
Sbjct: 193 KFVKLGIDPPKGVLCYGPPGTGKT-LLARAVANRTDACFIRVIGSELVQK 241
Score = 107 bits (256), Expect = 1e-23
Identities = 51/82 (62%), Positives = 60/82 (73%)
Frame = +2
Query: 263 KRVNELTGIKESDTGXXXXXXXXXXXXKQTLQNEQPLQVARCTKIINADSNDPKYIINVK 442
K++N+L GIKESDTG KQ +Q EQPLQVARCTKII+ ++ D KY+INVK
Sbjct: 50 KKINDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVK 109
Query: 443 QFAKFVVDLQDSVAPTDIEEGM 508
Q AKFVV L D V+PTDIEEGM
Sbjct: 110 QIAKFVVGLGDKVSPTDIEEGM 131
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 168 LDEGDIALLKSYGQGQYTKIIKEVEEGIQ 254
LDE DIALLK+YG G Y+ IK+VE+ I+
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIK 46
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 145 bits (351), Expect = 4e-35
Identities = 70/109 (64%), Positives = 78/109 (71%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
VGVD+ KYQI IPLPPKIDP+VTMM VEEKPD TYSD+GGCKEQIEK+REVVE P+LHPE
Sbjct: 170 VGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPE 229
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
KFV+LGI +GKT V FIRV+GSELV K
Sbjct: 230 KFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQK 278
Score = 82.6 bits (195), Expect = 3e-16
Identities = 43/94 (45%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Frame = +2
Query: 245 RNSAVMKRVNELT------GIKESDTGXXXXXXXXXXXXKQTLQNEQPLQVARCTKIINA 406
R V K +NEL GIKESDTG KQ +Q EQPL VA CT+II+
Sbjct: 75 RIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISP 134
Query: 407 DSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGM 508
++ D KY++++K+ K+VV L D +PTDIE GM
Sbjct: 135 NTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGM 168
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 90.6 bits (215), Expect = 1e-18
Identities = 45/109 (41%), Positives = 62/109 (56%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V + + Y +H+ LP K+DP V +M+VE+ PD TY +GG +QI++++EV+E P+ HPE
Sbjct: 126 VALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPE 185
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
F LGI TGKT + FIRV GSELV K
Sbjct: 186 LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 90.6 bits (215), Expect = 1e-18
Identities = 45/109 (41%), Positives = 62/109 (56%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V + + Y +H+ LP K+DP V +M+VE+ PD TY +GG +QI++++EV+E P+ HPE
Sbjct: 126 VALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPE 185
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
F LGI TGKT + FIRV GSELV K
Sbjct: 186 LFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 234
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 85.8 bits (203), Expect = 3e-17
Identities = 42/109 (38%), Positives = 62/109 (56%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V + R+ + LPP+ D +++++ EKPDV+Y+D+GGC Q +++RE VE PL H E
Sbjct: 120 VALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHE 179
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
+ ++GI TGKT + T AFIRV+GSE V K
Sbjct: 180 LYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK 228
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 78.6 bits (185), Expect = 5e-15
Identities = 36/96 (37%), Positives = 57/96 (59%)
Frame = +1
Query: 550 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXX 729
L ++DP V++M+VE+ P +Y+D+GG + QI++++E VE PL HPE + +GI
Sbjct: 166 LQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGV 225
Query: 730 XXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
TGKT + + F+RV+GSEL+ K
Sbjct: 226 ILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 261
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 78.6 bits (185), Expect = 5e-15
Identities = 36/96 (37%), Positives = 57/96 (59%)
Frame = +1
Query: 550 LPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXX 729
L ++DP V++M+VE+ P +Y+D+GG + QI++++E VE PL HPE + +GI
Sbjct: 166 LQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGV 225
Query: 730 XXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
TGKT + + F+RV+GSEL+ K
Sbjct: 226 ILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQK 261
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 75.8 bits (178), Expect = 3e-14
Identities = 37/107 (34%), Positives = 58/107 (54%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
VGV+++ Y I LP + D V M+V+EKP Y+D+GG ++QI++L E + P+ H E
Sbjct: 136 VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKE 195
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELV 831
+F KLG+ TGKT + F+++ G +LV
Sbjct: 196 RFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 75.8 bits (178), Expect = 3e-14
Identities = 38/107 (35%), Positives = 58/107 (54%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
VGV+++ Y I LP + D V M+V+EKP Y+D+GG ++QI++L E + P+ H E
Sbjct: 135 VGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKE 194
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELV 831
+F KLGI TGKT + F+++ G +LV
Sbjct: 195 QFEKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 241
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 68.9 bits (161), Expect = 4e-12
Identities = 36/109 (33%), Positives = 58/109 (53%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V +D I LP ++DP V M E+ +++YS VGG +QI +LRE +E PL++PE
Sbjct: 104 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE 163
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
F+++GI TGKT + + F++V+ S ++ K
Sbjct: 164 LFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 212
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 68.9 bits (161), Expect = 4e-12
Identities = 36/109 (33%), Positives = 58/109 (53%)
Frame = +1
Query: 511 VGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPE 690
V +D I LP ++DP V M E+ +++YS VGG +QI +LRE +E PL++PE
Sbjct: 104 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPE 163
Query: 691 KFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPTGXTPAFIRVIGSELVPK 837
F+++GI TGKT + + F++V+ S ++ K
Sbjct: 164 LFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDK 212
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 592 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVL 771
E DV Y DVGG ++Q+ ++RE+VE PL HP+ F +G+ +GKT ++
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT-LI 257
Query: 772 APSPTGXTPAFIRVI-GSELVPK 837
A + T AF I G E++ K
Sbjct: 258 ARAVANETGAFFFCINGPEIMSK 280
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/89 (31%), Positives = 43/89 (48%)
Frame = +1
Query: 565 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXX 744
+P+ V E P+V+++D+GG + +L+E V+ P+ HPEKF K G+
Sbjct: 463 NPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 522
Query: 745 XXTGKTCVLAPSPTGXTPAFIRVIGSELV 831
GKT + FI V G EL+
Sbjct: 523 PGCGKTLLAKAIANECQANFISVKGPELL 551
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 592 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVL 771
E +V Y DVGG ++Q+ ++RE+VE PL HP+ F +G+ +GKT ++
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT-LI 257
Query: 772 APSPTGXTPAFIRVI-GSELVPK 837
A + T AF I G E++ K
Sbjct: 258 ARAVANETGAFFFCINGPEIMSK 280
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = +1
Query: 565 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXX 744
+P+ V E P+V++ D+GG + +L+E V+ P+ HPEKF K G+
Sbjct: 463 NPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 522
Query: 745 XXTGKTCVLAPSPTGXTPAFIRVIGSELV 831
GKT + FI V G EL+
Sbjct: 523 PGCGKTLLAKAIANECQANFISVKGPELL 551
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 51.6 bits (118), Expect = 6e-07
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 592 EEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVL 771
E +V Y DVGG ++Q+ ++RE+VE PL HP+ F +G+ +GKT ++
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT-LI 258
Query: 772 APSPTGXTPAFIRVI-GSELVPK 837
A + T AF I G E++ K
Sbjct: 259 ARAVANETGAFFFCINGPEIMSK 281
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = +1
Query: 565 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXX 744
+P+ V E P+V++ D+GG + +L+E V+ P+ HPEKF K G+
Sbjct: 464 NPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGP 523
Query: 745 XXTGKTCVLAPSPTGXTPAFIRVIGSELV 831
GKT + FI + G EL+
Sbjct: 524 PGCGKTLLAKAIANECQANFISIKGPELL 552
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +1
Query: 562 IDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXX 741
+ P++ E P VT+ DVGG K+ +KL++ VE P+ H FVK+GI
Sbjct: 268 VGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHG 327
Query: 742 XXXTGKTCVLAPSPTGXTPAFIRVIGSEL 828
KT + + +F + +EL
Sbjct: 328 PPGCSKTTLAKAAANAAQASFFSLSCAEL 356
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +1
Query: 583 MQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKT 762
+Q+ E D+ + D+GG E I L+E+V PLL+PE F I TGKT
Sbjct: 372 LQINE--DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKT 429
Query: 763 CV-----LAPSPTGXTPAFIRVIGSELVPK 837
+ A S G +F G++++ K
Sbjct: 430 LIARALACAASKAGQKVSFYMRKGADVLSK 459
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPT 786
+T++DV G E E+L E+VE L +PEK+V+LG TGKT +LA +
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLLVGLPGTGKT-LLAKAVA 379
Query: 787 GXTPA-FIRVIGSELV 831
G FI SE V
Sbjct: 380 GEAEVPFISCSASEFV 395
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = +1
Query: 553 PPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXX 732
P +I + Q+E VT+ DV G E + EVVE L PE+F +G
Sbjct: 199 PLQIGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVL 257
Query: 733 XXXXXXTGKTCVLAPSPTGXTPA-FIRVIGSELV 831
TGKT +LA + G F + GSE V
Sbjct: 258 LVGPPGTGKT-LLAKAIAGEAGVPFFSISGSEFV 290
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 40.3 bits (90), Expect = 0.002
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPT 786
+T++DV G E E+L E+VE L +P+++V+LG TGKT +LA +
Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLLVGLPGTGKT-LLAKAVA 383
Query: 787 GXTPA-FIRVIGSELV 831
G + FI SE V
Sbjct: 384 GESDVPFISCSASEFV 399
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 39.1 bits (87), Expect = 0.004
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Frame = +1
Query: 553 PPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXX 732
P + + Q+E VT+ DV G E + EVVE L PE+F +G
Sbjct: 206 PLQFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVL 264
Query: 733 XXXXXXTGKTCVLAPSPTGXTPA-FIRVIGSELV 831
TGKT +LA + G F + GSE V
Sbjct: 265 LIGPPGTGKT-LLAKAIAGEAGVPFFSISGSEFV 297
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 38.7 bits (86), Expect = 0.005
Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 595 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLA 774
EK T+ DV GC + ++L EVVE L +P KF +LG TGKT +LA
Sbjct: 355 EKNVKTFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILLTGAPGTGKT-LLA 412
Query: 775 PSPTG--XTPAFIRVIGSE 825
+ G P F R GSE
Sbjct: 413 KAIAGEAGVPFFYRA-GSE 430
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +1
Query: 601 PDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPS 780
P+V + DVGG ++ + + V+ PLLH + F G+ TGKT +
Sbjct: 653 PNVKWDDVGGLEDVKTSILDTVQLPLLHKDLF-SSGLRKRSGVLLYGPPGTGKTLLAKAV 711
Query: 781 PTGXTPAFIRVIGSELV 831
T + F+ V G EL+
Sbjct: 712 ATECSLNFLSVKGPELI 728
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +1
Query: 583 MQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKT 762
++VE T+ D GG K+ +++L V P+L+PE F K+G+ GKT
Sbjct: 222 LEVEGTKGPTFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKT 281
Query: 763 CVLAPSPTGXTPAFIRVIGSELV 831
+ F ++ +E++
Sbjct: 282 KLANAIANEAGVPFYKISATEVI 304
Score = 32.7 bits (71), Expect = 0.31
Identities = 18/79 (22%), Positives = 31/79 (39%)
Frame = +1
Query: 601 PDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPS 780
PDV + DVGG + + P+ P+ + G+ GKT + +
Sbjct: 523 PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCGKTLIAKAA 582
Query: 781 PTGXTPAFIRVIGSELVPK 837
F+ + G+EL+ K
Sbjct: 583 ANEAGANFMHIKGAELLNK 601
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 37.5 bits (83), Expect = 0.011
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 571 TVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXX 750
T+T K + + DV GC E +++ E V L +P+K+ LG
Sbjct: 307 TITRADKHSKNKIYFKDVAGCDEAKQEIMEFVHF-LKNPKKYEDLGAKIPKGALLVGPPG 365
Query: 751 TGKTCVLAPSPTGXTPA-FIRVIGSELV 831
TGKT +LA + G + F+ + GS+ +
Sbjct: 366 TGKT-LLAKATAGESGVPFLSISGSDFM 392
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 36.7 bits (81), Expect = 0.019
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 574 VTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXT 753
+T K + + DV GC+E +++ E V L +P+K+ LG T
Sbjct: 313 ITRADKNSKNKIYFKDVAGCEEAKQEIMEFVHF-LQNPKKYEDLGAKIPKGALLVGPPGT 371
Query: 754 GKTCVLAPSPTGXTPA-FIRVIGSELV 831
GKT +LA + G + F+ + GS+ +
Sbjct: 372 GKT-LLAKATAGESAVPFLSISGSDFM 397
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/83 (28%), Positives = 35/83 (42%)
Frame = +1
Query: 589 VEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCV 768
V EKP++ +SDV G + + L+E V P+ P+ F TGK+ +
Sbjct: 123 VREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKR-RPWRAFLLYGPPGTGKSYL 181
Query: 769 LAPSPTGXTPAFIRVIGSELVPK 837
T F V S+LV K
Sbjct: 182 AKAVATEADSTFFSVSSSDLVSK 204
>At1g53790.1 68414.m06122 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 444
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 168 LDEGDIALLKSYGQGQYTKIIKEVEEGIQQ 257
LDE DIAL+K+YG Y+ IK+VE+ I++
Sbjct: 10 LDEDDIALVKTYGLVPYSAPIKKVEKEIKE 39
Score = 32.3 bits (70), Expect = 0.41
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 263 KRVNELTGIKESDTGXXXXXXXXXXXXKQTLQNEQPLQV--ARCTKIINAD 409
+++N+L GIKESDTG KQ +Q QPLQV C + I D
Sbjct: 42 EKINDLCGIKESDTG-------LAPLSKQMMQEGQPLQVGYVSCFRYIPID 85
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/81 (28%), Positives = 34/81 (41%)
Frame = +1
Query: 595 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLA 774
E+ +VT+ D+G E E L+E+V PL P+ F + TGKT +
Sbjct: 514 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAK 573
Query: 775 PSPTGXTPAFIRVIGSELVPK 837
+FI V S + K
Sbjct: 574 AIAKEAGASFINVSMSTITSK 594
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/81 (28%), Positives = 34/81 (41%)
Frame = +1
Query: 595 EKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLA 774
E+ +VT+ D+G E E L+E+V PL P+ F + TGKT +
Sbjct: 509 EEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAK 568
Query: 775 PSPTGXTPAFIRVIGSELVPK 837
+FI V S + K
Sbjct: 569 AIAKEAGASFINVSMSTITSK 589
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 613 YSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVL 771
+ V G + + ++EVV PLL+PE F LG+ TGKT V+
Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVV 770
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 32.7 bits (71), Expect = 0.31
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTCVLAPSPT 786
VT++D+G E E L+E+V PL P+ F + TGKT +
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIAN 470
Query: 787 GXTPAFIRVIGSELVPK 837
+FI V S + K
Sbjct: 471 EAGASFINVSMSTITSK 487
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 32.3 bits (70), Expect = 0.41
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +1
Query: 592 EEKPD--VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKTC 765
+E P+ VT+ DV G + +L+EVV+ L +P+K+ LG TGKT
Sbjct: 240 QEVPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLLVGPPGTGKT- 297
Query: 766 VLAPSPTGXTPA-FIRVIGSELV 831
+LA + G F SE V
Sbjct: 298 LLARAVAGEAGVPFFSCAASEFV 320
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 604 DVTYSDVGGCKEQIEKLREVVETPLLHPEKFVK 702
DVT+ D+G ++ + L+E+V PL PE F K
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCK 848
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLG-IXXXXXXXXXXXXXTGKTCVLAPSP 783
V + D+G ++ + L E+V P+ PE F + + TGKT +
Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALA 407
Query: 784 TGXTPAFIRVIGSELVPK 837
T FI + GS L K
Sbjct: 408 TEAGANFISITGSTLTSK 425
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLG-IXXXXXXXXXXXXXTGKTCVLAPSP 783
V + D+G + + L E+V P+ PE F + + TGKT +
Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALA 206
Query: 784 TGXTPAFIRVIGSELVPK 837
T FI + GS L K
Sbjct: 207 TEAGANFISITGSTLTSK 224
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGI-XXXXXXXXXXXXXTGKTCVLAPSP 783
V++SD+G + + L+E+V PL PE F K + TGKT +
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1006
Query: 784 TGXTPAFIRVIGSELVPK 837
T FI + S + K
Sbjct: 1007 TEAGANFINISMSSITSK 1024
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGI-XXXXXXXXXXXXXTGKTCVLAPSP 783
V++ D+G + E L+E+V PL PE F K + TGKT +
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1019
Query: 784 TGXTPAFIRVIGSELVPK 837
T FI + S + K
Sbjct: 1020 TEAGANFINISMSSITSK 1037
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +1
Query: 583 MQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPEKFVKLGIXXXXXXXXXXXXXTGKT 762
+ EEK VT+ D G + +L+E+V L + E+F GI TGKT
Sbjct: 305 ISAEEKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKT 363
Query: 763 CVLAPSPTG 789
+LA + G
Sbjct: 364 -LLAKAIAG 371
>At1g43000.1 68414.m04950 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 216
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 375 CSGCSFCSVCLSAARSHK 322
CSG +FCS CL+ R+H+
Sbjct: 42 CSGNAFCSSCLAHHRTHR 59
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 27.9 bits (59), Expect = 8.8
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Frame = +1
Query: 604 DVTYSDVGGCKEQIEKLREVVETPLLHPEKFV--KLGIXXXXXXXXXXXXXTGKTCVLAP 777
DV + +GG + + L E+V PL PE F KL + TGKT +
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKL-LGPQKGVLLYGPPGTGKTMLAKA 141
Query: 778 SPTGXTPAFIRVIGSELVPK 837
FI V S L+ K
Sbjct: 142 IARESEAVFINVKVSNLMSK 161
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 607 VTYSDVGGCKEQIEKLREVVETPLLHPEKFVK 702
VT+ D+G + + L+E+V P PE F K
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCK 763
>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:719291)
[Arabidopsis thaliana]
Length = 2603
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 467 LQDSVAPTDIEEGMGLVWI 523
+Q VAPTD++ G GL W+
Sbjct: 1869 VQAHVAPTDVDPGAGLQWL 1887
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,051
Number of Sequences: 28952
Number of extensions: 329437
Number of successful extensions: 922
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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