Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0914
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    30   0.35 
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    30   0.35 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   2.5  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    27   3.3  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   5.7  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   5.7  

>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 487 VSRSNKQSPLYYIVKSNNFNAANNLEQSTILPQTSA*IMTLVTSLGMLINSLMXFSNGPN 666
           VS  N     Y    S   N+  +  +S++ PQ ++ +  + + +   +NS+   SNG +
Sbjct: 322 VSSCNPSGSEYLQHASKLENSGIHQSKSSVFPQPASAMKPMASPMLPNVNSMPYLSNGDH 381

Query: 667 N-NGDTSN 687
           N NG+TS+
Sbjct: 382 NNNGNTSS 389


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
 Frame = +3

Query: 78  DLGDLIIERRN----HKVPHD------LRNVENPSQRPEHRD-PQDYTALNERKSQDKHT 224
           DL D + E+RN    H   HD      +RN+E+ + + E  D   D   +NE++S DK  
Sbjct: 33  DLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDEANQYEQTDSSSDQEVMNEKQSLDK-- 90

Query: 225 ENLIPNLTNSINP 263
           EN   N+ +  NP
Sbjct: 91  ENRNDNIPHENNP 103


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 99  ERRNHKVPHDLRNVENPSQRPEHRDPQDYTALNERKSQDKH 221
           ++ +HK P D  + + P  +  H+ P+D       K ++ H
Sbjct: 361 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 401



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 99  ERRNHKVPHDLRNVENPSQRPEHRDPQDYTALNERKSQDKH 221
           ++ +HK P D  + + P  +  H+ P+D       K ++ H
Sbjct: 370 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 410



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 99  ERRNHKVPHDLRNVENPSQRPEHRDPQDYTALNERKSQDKH 221
           ++ +HK P D  + + P  +  H+ P+D       K ++ H
Sbjct: 379 DKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHH 419



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 99  ERRNHKVPHDLRNVENPSQRPEHRDPQD-YTALNERKSQDKHTENLIPNLTNSIN 260
           ++ +HK P D  + + P  +  H+ P++ +    E+  Q  H   +I    + IN
Sbjct: 397 DKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSSHELLVIEAFADLIN 451


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 278 IDKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQDTVPKIIYVQTDGL 433
           + K + +  Q + A    +GN   SKE+ SEN      +    ++Y + D +
Sbjct: 15  LKKQQQLEKQKQEASYELSGNSSPSKENGSENVDNGEMEDETMLVYTEEDNI 66


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 347 QSKESRSENSGTSTQDTVPKIIYVQ 421
           ++K+S+SENS  S    + K +Y+Q
Sbjct: 91  RNKKSKSENSEASPAPVINKAVYIQ 115


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 84  GDLIIERRNHKVPHDLRNVENPSQRPEHRDPQDYTALN--ERKSQDKHTENLIPNLTNSI 257
           GDL+I +   +VP DLR VE         D  + T  N   +KS +  + N+     N+I
Sbjct: 139 GDLVILQIGDRVPADLRIVEATEL---EIDESNLTGENSPRKKSSEAISSNISLTERNNI 195

Query: 258 NPMVTLV 278
             M TLV
Sbjct: 196 AFMGTLV 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,614
Number of Sequences: 5004
Number of extensions: 60621
Number of successful extensions: 202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)