Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0914
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0006 + 7274148-7274986,7275636-7277586 34 0.16
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 3.5
10_06_0042 - 10015657-10017840 29 6.0
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 28 8.0
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 28 8.0
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 8.0
08_01_1086 - 11150017-11151564 28 8.0
04_01_0077 - 873711-874091,874569-874805 28 8.0
02_02_0537 + 11308195-11309667 28 8.0
01_05_0645 - 23899579-23904483 28 8.0
>11_02_0006 + 7274148-7274986,7275636-7277586
Length = 929
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 257 KSYGYTGIDKDESIVSQDKVAFTNDNGNLYQSKE-SRSENSGTSTQDTVPKIIYVQTDGL 433
KS G DE V Q K +D+ NL+ + S ENS + Q+ + KI+Y + DGL
Sbjct: 317 KSVGQFCCTSDEGFVYQMKPLTKSDSENLFLKRTFSSEENSPSQLQEVINKILY-KCDGL 375
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/53 (24%), Positives = 30/53 (56%)
Frame = +3
Query: 99 ERRNHKVPHDLRNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSI 257
ER++ K DL++++ ++ E + +D + ++E + + + +LIP L I
Sbjct: 393 ERKDVKYREDLKHLKQKIKKLEDKTEKDTSKIDESTKEVEESSSLIPQLEEEI 445
>10_06_0042 - 10015657-10017840
Length = 727
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 610 VTSLGMLINSLMXFSNGPNNNGDTSNYGFW 699
V LG+L+NSL S +NNG +S + FW
Sbjct: 60 VVGLGLLLNSL---SISGSNNGSSSIFAFW 86
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 272 TGIDKDESIVSQDK----VAFTNDNGNLYQSKESRSENSGTSTQDTVPKIIYV 418
T + D+ ++S D VAF + NL QS +S T DT+P+ Y+
Sbjct: 1111 TKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYI 1163
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 272 TGIDKDESIVSQDK----VAFTNDNGNLYQSKESRSENSGTSTQDTVPKIIYV 418
T + D+ ++S D VAF + NL QS +S T DT+P+ Y+
Sbjct: 722 TKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYI 774
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 272 TGIDKDESIVSQDK----VAFTNDNGNLYQSKESRSENSGTSTQDTVPKIIYV 418
T + D+ ++S D VAF + NL QS +S T DT+P+ Y+
Sbjct: 963 TKVFSDKILISTDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYI 1015
>08_01_1086 - 11150017-11151564
Length = 515
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 272 TGIDKDESIVSQDK----VAFTNDNGNLYQSKESRSENSGTSTQDTVPKIIYV 418
T + D+ ++S D VAF + NL QS +S T DT+P+ Y+
Sbjct: 121 TKVFSDKILISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYI 173
>04_01_0077 - 873711-874091,874569-874805
Length = 205
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +2
Query: 320 FTNDNGNLYQSKESRSENSGTSTQDTVPKIIYVQTDGLQDN 442
+ DN NL Q E +SE +GT DT+P I D DN
Sbjct: 70 YKRDNQNLQQDNE-QSE-AGTRRMDTIPNGIRCYLDAAWDN 108
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 272 TGIDKDESIVSQDK----VAFTNDNGNLYQSKESRSENSGTSTQDTVPKIIYV 418
T + D+ ++S D VAF + NL QS +S T DT+P+ Y+
Sbjct: 121 TKVFSDKILISTDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYI 173
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +2
Query: 272 TGIDKDESIVSQDK----VAFTNDNGNLYQSKESRSENSGTSTQDTVPKIIYV 418
T + D+ ++S D VAF + NL QS +S T DT+P+ Y+
Sbjct: 1240 TKVFSDKILISTDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYI 1292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,984
Number of Sequences: 37544
Number of extensions: 334504
Number of successful extensions: 786
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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