Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0914
         (833 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    30   2.2  
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ...    30   2.2  
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ...    30   2.2  
At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family pr...    29   5.0  
At1g79940.1 68414.m09342 DNAJ heat shock N-terminal domain-conta...    29   5.0  
At1g62010.1 68414.m06994 mitochondrial transcription termination...    29   5.0  
At5g32405.1 68418.m03813 hypothetical protein                          28   8.8  
At4g04030.1 68417.m00573 ovate family protein 65% similar to ova...    28   8.8  
At3g54730.1 68416.m06055 hypothetical protein                          28   8.8  
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi...    28   8.8  
At2g19850.1 68415.m02321 hypothetical protein                          28   8.8  

>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 99  ERRNHKVPHDLRNVENPSQRPEHRDPQDYTALNERKSQDKHTENLIPNLTNSI 257
           ER++ K   DL++V+   ++ E +  +D + + +   + + + NLIP L  +I
Sbjct: 336 ERQDVKHREDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENI 388


>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 420

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 117 VPHDLRNVENPSQRPEHRDPQDYTALNERKSQDKHTENL 233
           V  D + V+  S  PE RDP+ +T L E   +D   EN+
Sbjct: 171 VSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209


>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
           protein contains similarity to RNA-binding protein;
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 422

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 117 VPHDLRNVENPSQRPEHRDPQDYTALNERKSQDKHTENL 233
           V  D + V+  S  PE RDP+ +T L E   +D   EN+
Sbjct: 171 VSADEKKVKRLSPLPEIRDPKIFTVLVENLPEDHSNENI 209


>At5g46760.1 68418.m05760 basic helix-loop-helix (bHLH) family
           protein
          Length = 592

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 565 QSTILPQTSA*IMTLVTSLGMLINSLMXFSNGPNNNG-DTSNYGF 696
           Q+ ++   S+ +++  + L   +N+L  F+NG  NNG + S++GF
Sbjct: 209 QNGVVELGSSEVISQSSDLMHKVNNLFNFNNGGGNNGVEASSWGF 253


>At1g79940.1 68414.m09342 DNAJ heat shock N-terminal
           domain-containing protein / sec63 domain-containing
           protein similar to SP|Q9UGP8 Translocation protein SEC63
           homolog {Homo sapiens}; contains Pfam profiles PF00226
           DnaJ domain, PF02889 Sec63 domain
          Length = 702

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 281 DKDESIVSQDKVAFTNDNGNLYQSKESRSENSGTSTQ 391
           D+DE     +K      NG++ Q KES SE SG+  +
Sbjct: 666 DEDEKKDMDEKRGSKKANGSVKQKKESSSEESGSEEE 702


>At1g62010.1 68414.m06994 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 415

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 257 KSYGYTGIDKDESIVSQDKVAFTNDN---GNLYQSKESRSENSGTSTQ--DTVPKII 412
           +SYG+T       I S  +V   ND    G+  Q  +SR  +S   T+   TVPKI+
Sbjct: 78  RSYGFTDSQISSIIRSDSRVLIDNDATSLGSKLQFLQSRGASSSELTEVVSTVPKIL 134


>At5g32405.1 68418.m03813 hypothetical protein
          Length = 256

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 364 TRFFTLI*IPIIICKRHFVLTNNRLVLIYTSVTIGFILFV 245
           TR F L+  P  +C R FV+   R+ L   S+ + F++FV
Sbjct: 192 TRSFYLVLFPQTLCSRLFVI---RISLYLFSIQLWFLIFV 228


>At4g04030.1 68417.m00573 ovate family protein 65% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 411

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 117 VPHDLRNVENPSQRPEHRDPQDY 185
           +P DL ++ +PS+ P+  DP DY
Sbjct: 22  LPQDLTSLVSPSEPPDPPDPPDY 44


>At3g54730.1 68416.m06055 hypothetical protein
          Length = 387

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 117 VPHDLRNVENPSQRPEHRDPQDY 185
           +P DL ++ +PS+ P+  DP DY
Sbjct: 26  LPQDLTSLVSPSEPPDPPDPPDY 48


>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1229

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 266  GYTGIDKDESIVSQDKVAFTNDNGNLY-QSKESRSENSGTSTQDTVPKIIYVQTDGLQD 439
            G  G    E+I+  D    T+ NGNLY Q KE        ++++    + +V +D + D
Sbjct: 853  GSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSVTSENNYVLLKHVSSDDVMD 911


>At2g19850.1 68415.m02321 hypothetical protein
          Length = 296

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 117 VPHDLRNVENPSQRPEHRDPQDY 185
           +P DL ++ +PS+ P+  DP DY
Sbjct: 26  LPQDLTSLVSPSEPPDPPDPPDY 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,552,654
Number of Sequences: 28952
Number of extensions: 295230
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)