Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0913
         (816 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0337 - 2519732-2521093                                           30   2.5  
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    29   4.4  

>11_01_0337 - 2519732-2521093
          Length = 453

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 116 DTLAAMLEVTKLLFHHPPNHNGYSELSLSTYSHQESLDH 232
           D +AA +E T L+FH P  H+ ++  + +   H  +  H
Sbjct: 204 DLVAAAVEYTSLIFHLPNKHSSWARTNPNICCHDIAFHH 242


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 302 IYILFFDLSFNFKVNLLASNL*EYGQ 225
           +Y LF  LSFN +VN+L  +   YGQ
Sbjct: 73  LYQLFLHLSFNLRVNVLGYDYSGYGQ 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,334
Number of Sequences: 37544
Number of extensions: 274446
Number of successful extensions: 395
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)