Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0911
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    28   6.9  

>U53148-2|AAB37078.1|  360|Caenorhabditis elegans Hypothetical
           protein C26F1.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = -3

Query: 697 FTRTAYRRKTVLTIMEFLSTLDREI-LLSVN*CSQNKLHRL---TTQYTAFVFIYRILFH 530
           +TR  +R+K++  ++  LS  D  + +L++   +  +L ++   T      V++Y +   
Sbjct: 31  YTRKTFRKKSINVLLAALSMSDLCVCVLAIPVFASTQLQQVIPPTITAMIMVYLYPVTIM 90

Query: 529 EENFKICLHKTLFLDNYLIYLHIF 458
            ++  + L  ++ +D YL   H F
Sbjct: 91  FQSVSVWLLVSITIDRYLAVCHPF 114


>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 272 SYKMVCITCPMYITETHAPVKAARLFF 352
           +YK V +  PMY TE   P+K  ++ F
Sbjct: 6   NYKRVALLDPMYTTEPKTPIKLEKIKF 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,818,783
Number of Sequences: 27780
Number of extensions: 326664
Number of successful extensions: 580
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)