Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0911
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59450.1 68418.m07451 scarecrow-like transcription factor 11 ...    28   6.4  
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila...    28   8.4  

>At5g59450.1 68418.m07451 scarecrow-like transcription factor 11
           (SCL11) scarecrow-like 11, Arabidopsis thaliana,
           EMBL:AF036307
          Length = 610

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 266 VKSYKMVCITCPMYITETHAPVKAA-RLFFKAINIRL 373
           +K+YK+   TCP+Y+T+  A  K+   L  KA  + +
Sbjct: 299 LKAYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHI 335


>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
           to WRN (Werner syndrome) protein - Mus musculus,
           EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00627: UBA/TS-N domain
          Length = 858

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 132 IFPKVNGWPVECGKF*XIPXLXVEEFPXKWXKRNSX*G 19
           IF  V+ W V CG+F  +P   + E P    K+    G
Sbjct: 461 IFQSVDDWDVACGEFCAMPSCELLEIPVPSEKQKDLEG 498


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,445,321
Number of Sequences: 28952
Number of extensions: 289259
Number of successful extensions: 382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)