Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0910
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.6  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   3.4  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   4.5  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    27   4.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.9  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   7.8  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    26   7.8  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +2

Query: 416 LLQQLPDEQGRI-REXLQEIIG--RFVGENHWSHKHVTKRGGKMDFSSHTTLKGDKGSNY 586
           LLQ  P  +G +  E +QE     +F GE   S   V        FSSHT +  DK S+Y
Sbjct: 537 LLQSDPLLKGSVFSEEVQEDYDERQFTGEAAVSANDVLSSSSPRHFSSHTPVNVDK-SSY 595

Query: 587 TVEVGHEI 610
               GH +
Sbjct: 596 LEMNGHSL 603


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 116 KAVLSTYVKRTCYFFENS 169
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 771 IVSLADSRNSSLECIEVISASWKEGRCF 688
           +VS ADSR  + ECIE  +  W +G  F
Sbjct: 777 LVSPADSRIVAYECIEKATTYWIKGTEF 804


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 663 FFIHREVTKNSDLPSTMLRSLQ 728
           F  H E+TKN +LPS+++  LQ
Sbjct: 259 FSDHYELTKNLELPSSLVECLQ 280


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 11/153 (7%)
 Frame = +3

Query: 135 TSNALVIFSRIRH*INRIKYEGV-CSHRCLSGSGCAGRGRLCYQNVDQGCRRTLSLPHCS 311
           T + L + SR+   +  +    V  SHR    S       LCY  +    R + SL    
Sbjct: 394 TEDLLKLISRLLPALGALSLSNVDFSHRTAVSSDILS---LCYIRLKDFLRISGSLKEEQ 450

Query: 312 AYYG---QFKDNHVVANELKALASLYLKRSYHY-LLSASYFNNYQTNREGFAXFFRK--- 470
           +YYG     K      N+LK + S + K       LS  Y   + T  E      +K   
Sbjct: 451 SYYGLKNSIKQIKAFENKLKYIQSFHEKHQQLIGALSEVYGLTHLTELEILEHLNKKEHV 510

Query: 471 ---LSDDSWEKTIGLISTSLRGVGRWTSRVTPH 560
              L+     +++ ++  SL+GV  W S  T +
Sbjct: 511 FNILTVFKDLQSLNVLDISLKGVNAWNSLETSY 543


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 803 PEXVTPRRLTKSYRXLTHEIPPSNVLK 723
           P  V+  + T++YR L   I P N+LK
Sbjct: 294 PVVVSKVKFTRNYRDLQQYINPDNILK 320


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 417 YFNNYQTNREGFAXFFRKLSDDSW 488
           Y+++  TNR G A F+R+ S   W
Sbjct: 15  YYSSLDTNRNGIAEFYRENSLILW 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,968
Number of Sequences: 5004
Number of extensions: 60112
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)