Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0910
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    31   1.2  
02_03_0120 + 15463163-15465250                                         29   4.7  
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900...    28   8.3  

>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 366 LASLYLKRSYHYLLSASYFNNYQTNREGFAXFFRKLSDDSWEKTIGLIS-TSLRGVG-RW 539
           L S+    SY Y    +YF+      +GFA FF++ SD+  +    LI   ++RG   R 
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189

Query: 540 TSRVTP 557
            S VTP
Sbjct: 190 QSIVTP 195


>02_03_0120 + 15463163-15465250
          Length = 695

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 224 WLWVCWPRKTLLSERRPRMQTDFKSAALQRVL 319
           W+W  W R+ L+     R+Q  F +  ++RVL
Sbjct: 599 WVWTLWGRRRLVDAADRRLQGRFVADEMRRVL 630


>01_04_0143 +
           16689471-16689498,16689687-16689818,16689974-16690013,
           16690214-16690280,16690349-16690431,16690755-16690821,
           16692741-16692821,16693696-16693791,16694172-16694198
          Length = 206

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 149 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 238
           CY  E + L++ HQI  C ++ S  V +W C
Sbjct: 71  CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,236,964
Number of Sequences: 37544
Number of extensions: 408419
Number of successful extensions: 1026
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)