Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0910
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.39 
SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             29   3.6  
SB_53561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  

>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 393 YHYLLSASYFNNYQTNREGFAXFFRKLSDDSWE 491
           Y YL  A +F+    N  GF  FF+K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_39739| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1120

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 183 RIKYEGVCSHRCLSGSGCAGRGRLCYQNVDQGCRRTLSLP 302
           R+ + GVC + C +   CAG  + C      GC RT + P
Sbjct: 574 RVDHVGVCVNYCGTDGDCAGDKKCC----SNGCGRTCTSP 609


>SB_53561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 339 HVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAXFFRK 470
           H   N++    S YLKR  H +L  + F  + T  +    F+RK
Sbjct: 33  HSTGNDV--FTSFYLKRCLHVILLETMFARHSTGNDVCTSFYRK 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,367,671
Number of Sequences: 59808
Number of extensions: 465896
Number of successful extensions: 1055
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)