Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0910
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60270.1 68418.m07554 lectin protein kinase family protein co...    33   0.18 
At3g45440.1 68416.m04905 lectin protein kinase family protein co...    30   1.7  
At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s...    30   2.3  
At3g45410.1 68416.m04902 lectin protein kinase family protein co...    29   3.9  
At2g44630.1 68415.m05555 kelch repeat-containing F-box family pr...    29   5.2  
At5g17220.1 68418.m02018 glutathione S-transferase, putative           28   6.9  
At2g40240.1 68415.m04948 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At3g45430.1 68416.m04904 lectin protein kinase family protein co...    28   9.1  

>At5g60270.1 68418.m07554 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 668

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 224 WLWVCWPRKTLLSERRPRMQTDFKSAALQRVLR 322
           W+  CW R +L+  R PR+ T+F S  +++VL+
Sbjct: 557 WVSECWKRSSLIDARDPRL-TEFSSQEVEKVLK 588


>At3g45440.1 68416.m04905 lectin protein kinase family protein
           contains Legume lectins beta-chain signature,
           PROSITE:PS00307 and PS00108: Serine/Threonine protein
           kinases active-site signature, PROSITE:PS00108
          Length = 669

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 224 WLWVCWPRKTLLSERRPRMQTDFKSAALQRVLR 322
           W+  CW   +LL  R PRM+ +  +  ++ VL+
Sbjct: 555 WVCECWKMASLLGARDPRMRGEISAEEVEMVLK 587


>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
           similarity to leucine-rich repeats containing F-box
           protein FBL3 GI:5919219 from [Homo sapiens]
          Length = 785

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 201 VCSHRC-LSGSGCAGRGRLCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVA 350
           VC   C L+  GCA     C  +V Q C++  SL  C   Y  F +N ++A
Sbjct: 441 VCESLCYLNIKGCALLSDACIASVIQRCKKLCSLIVC---YTSFSENSILA 488


>At3g45410.1 68416.m04902 lectin protein kinase family protein
           contains Pfam profiles: PF00069 protein kinase domain,
           PF00138 legume lectins alpha domain, PF00139 legume
           lectins beta domain
          Length = 664

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 224 WLWVCWPRKTLLSERRPRMQTDFKSAALQRVLR 322
           W++ CW    L   R PR+  +F    ++ VL+
Sbjct: 555 WVYECWKEACLFKTRDPRLGVEFLPEEVEMVLK 587


>At2g44630.1 68415.m05555 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF00646: F-box domain, PF01344: Kelch motif
          Length = 372

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 351 NELKALASLYLKRSYHYLLSASYFNNYQTNREGFAXFFRKLSDDSWEKT 497
           NE    AS+ L R  + L S  Y N+Y T    +  +   + +D+W KT
Sbjct: 218 NEWFTHASVSLDRKVYALNSREYMNSYDTRDGSYQRY--TIPEDNWWKT 264


>At5g17220.1 68418.m02018 glutathione S-transferase, putative
          Length = 214

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 315 YYGQFKDNHVVANELKALASLYLKRSYHYLLSASYFNNYQTNREGFAXFFRKLSD-DSWE 491
           Y  +   N  +A E   +A L    +  YL+S +  N     R  F  ++ ++SD  SW+
Sbjct: 147 YNNRLSSNRFLAGEEFTMADLTHMPAMGYLMSITDINQMVKARGSFNRWWEEISDRPSWK 206

Query: 492 KTIGL 506
           K + L
Sbjct: 207 KLMVL 211


>At2g40240.1 68415.m04948 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 351

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = -1

Query: 402 DNGRNVSNTVRLMPSVRSLQRGCP*I-GRNTRCSAADL--KSVCILGRRSDSRVFLGQHT 232
           D  + ++NT      +  L+R  P I G  +R +A D+    +C LGR  D+ + +G  +
Sbjct: 75  DTFKFLTNTASYSSYLEDLRRVLPQIDGGFSRKNAYDILISRLCKLGRIDDALIVIGDMS 134

Query: 231 QSQTGNDESIHLHI*CDL 178
             + G   S +  I C L
Sbjct: 135 NGRLGLTPSTYHPILCSL 152


>At3g45430.1 68416.m04904 lectin protein kinase family protein
           contains Pfam domains PF00138: Legume lectins alpha
           domain and PF00069: Protein kinase domain
          Length = 613

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 224 WLWVCWPRKTLLSERRPRMQTDFKSAALQRVLR 322
           W+  CW + +LL  + PR+  +F    ++ V++
Sbjct: 496 WVCECWKKDSLLDAKDPRLGEEFVPEEVELVMK 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,527
Number of Sequences: 28952
Number of extensions: 325328
Number of successful extensions: 828
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)