Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0909
         (847 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   3.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.3  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   5.3  

>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 273 QFPIAAKCTKQSFVSKSFLQPFFRVYTETQILVKFCANCV 154
           QF +    T  +FVS  F  PF+       +LV+   + +
Sbjct: 348 QFEMTQNSTNINFVSTFFKIPFYSTLRPINLLVQIILDVI 387


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -1

Query: 277 NTISYRSEMYKTVLCFEKFFTTFFSRLYG----NTNFGQILRELRQS*LLQYKLFCSYRL 110
           N  S R++  +T   F  F+  F  + Y     N    + L E  ++ L    + CS   
Sbjct: 19  NVSSTRTKYLRTN--FPNFYNDFEVQRYTWKCENQKCVKYLVEDEETSLATCNMLCSEPA 76

Query: 109 YTPKSFYSSCINRKISIINRS 47
             PK  +    NR+ SII+++
Sbjct: 77  IWPKPVHIKLTNRESSIIDKT 97


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -3

Query: 302 DLSQNSNFEHNFLSQRNVQNSPL 234
           +  +N++F   FLS++N+Q++ +
Sbjct: 417 ETKRNADFLATFLSEQNIQSTSI 439


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,247
Number of Sequences: 336
Number of extensions: 4633
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)