Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0909
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.8  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   5.8  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.8  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 693 LHPPMFPIQRLHWSSLD 643
           LH P  P++R+HW  +D
Sbjct: 848 LHKPTRPLKRVHWQRVD 864


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 690 HPPMFPIQRLHWSSLDSSRTDH 625
           HPP+ P+Q +H S+L S   DH
Sbjct: 382 HPPIHPVQMVHRSALPSQ--DH 401


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 112 LYTPKSFYSSCINRKI----SIINRSVNVRAKRTTRTFRLV 2
           L  P+S+++ CI + +    S++N  V +   RT  T+ L+
Sbjct: 677 LNLPRSYFADCITKSVSNIDSLLNTPVKILFGRTEYTYPLI 717


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 256 RCDRKLCSKLLFWLKSGGGTKSPL 327
           R  RKL ++L  W+K G  T++ L
Sbjct: 575 RSKRKLFTRLYIWMKDGDSTETSL 598


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,619,716
Number of Sequences: 5004
Number of extensions: 77276
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)