Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0909
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    33   0.32 
At5g41100.2 68418.m04997 expressed protein                             29   3.9  
At5g41100.1 68418.m04996 expressed protein                             29   3.9  
At3g15605.1 68416.m01978 hypothetical protein                          29   3.9  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    28   9.0  

>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 370 KKATTSVIEL*NRKDFGNIFKSLRELFIS*PKIHSEFVDLIYSCYSDQFPKKHQEIRIKS 549
           ++ T S+I+L  R     + +   E FI+ P+    FVDL+ SCY  QFP K +   +K 
Sbjct: 446 QQGTPSIIQLAQRHFSYFLSRIDDEKFITEPE---HFVDLLRSCYLPQFPIKLEYTTVKV 502

Query: 550 GLSVEFV-LHT 579
             + E   LHT
Sbjct: 503 DNAPEATELHT 513


>At5g41100.2 68418.m04997 expressed protein
          Length = 582

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 823 PRRSKSPGLRPRCAGTGESAH-SHWMLLPSXAHLETGVXHRLVPIAPAYVPHSAS 662
           PRRSKSPGL       G SA  + W    S   + T +    +P+ P  VP S S
Sbjct: 471 PRRSKSPGL------VGHSAPLTAWNQERSNVVVSTNIVASPLPVPPLVVPRSYS 519


>At5g41100.1 68418.m04996 expressed protein
          Length = 586

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 823 PRRSKSPGLRPRCAGTGESAH-SHWMLLPSXAHLETGVXHRLVPIAPAYVPHSAS 662
           PRRSKSPGL       G SA  + W    S   + T +    +P+ P  VP S S
Sbjct: 471 PRRSKSPGL------VGHSAPLTAWNQERSNVVVSTNIVASPLPVPPLVVPRSYS 519


>At3g15605.1 68416.m01978 hypothetical protein
          Length = 543

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 718 GVXHRLVPIAPAYVPHSASALVEFGFFK 635
           GV  +++P +P   PHS  ALV FG  K
Sbjct: 404 GVDAKMIPSSPMSSPHSGRALVIFGTTK 431


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = -1

Query: 841 SKPADAPRRSKSPGLRPRCAGTGESAHSHWMLLPSXAHL-ETGVXHRLVPIAPAYVPH 671
           S P   P  S  P   P     G   H H +LLP  +HL    + HRL  I P+   H
Sbjct: 605 SPPIVGPTPSSPP---PSTPTPGTLLHPHHLLLPQLSHLPHQYLHHRLRHILPSRHRH 659


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,854,058
Number of Sequences: 28952
Number of extensions: 396671
Number of successful extensions: 1020
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)