Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0908
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   2.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   5.7  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   7.5  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   7.5  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   7.5  

>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 304 VITCRCITSLLSSNMSCVM 360
           VIT RCI+ LL+S++ C++
Sbjct: 37  VITARCISVLLASSVCCIL 55


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 69  CRSITNIIYVFCQISSHRKI 128
           C SIT I+Y FC+I  ++ +
Sbjct: 84  CNSITVILYQFCKIRGYKAV 103


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 414 LQMVEKYSPEAADITASVRDLPTVKTAMGRARLGC 518
           ++ VE+ SPE AD       +  +  A+G   LGC
Sbjct: 3   VENVERLSPEQADAFFGQSSVDLISRALGGQVLGC 37


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 172 RPQKTYNSKTRDPVVIERSNLVNISKLM 255
           +PQK  N    D  ++ +  L+ +SKL+
Sbjct: 250 KPQKNTNDSNNDHTLLSQDQLIELSKLV 277


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 470 RSSNCEDSNGPRSAWLRL 523
           +S + ED NGP SAW+ L
Sbjct: 547 KSWSFEDPNGPASAWVEL 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,717
Number of Sequences: 5004
Number of extensions: 64133
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)